CAZyme Information: MGYG000000287_04927

Basic Information

• Species: Robinsoniella sp900539655
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
• CAZyme ID: MGYG000000287_04927
• CAZy Family: GH78
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
574	MGYG000000287_122|CGC1	64641.81	4.7206

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000287	7249439	MAG	Sweden	Europe

• Gene Location: Start: 5822; End: 7546 Strand: +

Full Sequence      

MIEKKGQNNNIFRILDNSILEDCEEDNRKRVYMTPRKILWESQGDKCPVENSSALLENRS
PQISLVPVNPCILKNKGESAGILLDFGVEIHGGISLLVWKASLKQGMRVRVRFGESAMEA
MSDIGGQTNATNDHANRDMIVEVRDMSMNPIGETGFRFVRIDLLDEGELEIKTVKSILIY
KDIPYKGSFSCSDEMLNRIWDTGAYTVHLNMQNYIWDGIKRDRLVWVGDMHPEVTTIQSV
FGYDESVPKSLDFVREETPLPGWMNGFPAYSMWWIIIQHDWFVHTGDLAYLKTQREYLKG
LYRQLSDGIDDNGKDSTPEVRFVDWPSFQNQPVVDAGLQALHTMATQKLQVIFTVLGEEN
LVRQCEEDLKKLASFDADYKDAKQAAALLAMAGLKDPVTVNDQLLKVGGAKGMSTFMGYY
ILTARAMAGDIIGCLECIREYWGGMLSLGATTFWEDFNIDWLENAAPIDRIVEDGAEVNV
HGTYGKHCYVGYRHSLCHGWAAGVTPWLLENVLGIQILEPGCKKVAVKPNLGDLSWAKGK
YPTPYGEIQVTCINRPDGTMDLQVEAPEEIEIIQ

Enzyme Prediction     

No EC number prediction in MGYG000000287_04927.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	79	571	1.6e-96	0.9781746031746031

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	1.75e-11	187	512	4	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	3.91e-09	514	568	1	55	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QBM20341.1	2.79e-227	23	573	19	565
QGQ98689.1	5.85e-223	26	573	10	557
QMV41231.1	2.28e-222	24	573	6	556
BBH21551.1	1.19e-219	26	573	10	556
QEC52590.1	3.39e-214	21	574	34	587

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3CIH_A	2.46e-45	59	555	170	679	Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]
2OKX_A	8.58e-29	183	572	533	937	Crystalstructure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1],2OKX_B Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1]
4XHC_A	5.35e-08	75	458	90	509	ChainA, Alpha-L-rhamnosidase [Klebsiella oxytoca],4XHC_B Chain B, Alpha-L-rhamnosidase [Klebsiella oxytoca]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KPL4	1.96e-06	76	231	378	534	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000058	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000287_04927.