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CAZyme Information: MGYG000000289_00546

You are here: Home > Sequence: MGYG000000289_00546

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella buccae
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella buccae
CAZyme ID MGYG000000289_00546
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
782 MGYG000000289_4|CGC5 83618.66 6.6381
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000289 3001000 MAG Sweden Europe
Gene Location Start: 105093;  End: 107441  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000289_00546.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 463 634 1.8e-41 0.8415841584158416

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 8.64e-54 377 749 18 345
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.47e-30 470 635 17 190
Amb_all domain.
pfam00544 Pec_lyase_C 4.13e-18 445 631 7 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QOR20273.1 1.16e-315 263 782 35 554
CBW15186.1 2.03e-315 263 782 50 569
QOR18408.1 7.94e-314 262 782 63 583
ATA84997.1 1.23e-300 276 782 38 544
QUB83317.1 5.77e-299 275 782 37 544

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.34e-25 420 749 33 326
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1PCL_A 1.43e-19 399 681 2 315
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1VBL_A 4.99e-19 470 640 133 341
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 4.80e-18 451 747 75 342
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 1.16e-17 451 747 75 342
ChainA, Pectate lyase C [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q65DC2 4.70e-23 415 639 64 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 4.70e-23 415 639 64 280
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q8GCB2 4.70e-23 415 639 64 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
P04960 1.12e-18 399 681 32 345
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
P11073 3.36e-17 451 747 97 364
Pectate lyase C OS=Dickeya chrysanthemi OX=556 GN=pelC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000533 0.998575 0.000333 0.000197 0.000180 0.000160

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000289_00546.