Species | Varibaculum cambriense_A | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum cambriense_A | |||||||||||
CAZyme ID | MGYG000000303_00662 | |||||||||||
CAZy Family | CBM32 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 21481; End: 28332 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH35 | 919 | 1254 | 2.7e-81 | 0.9837133550488599 |
GH20 | 345 | 704 | 3e-74 | 0.973293768545994 |
CBM32 | 54 | 186 | 1.7e-21 | 0.9274193548387096 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd06568 | GH20_SpHex_like | 4.34e-89 | 350 | 714 | 1 | 326 | A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
cd06563 | GH20_chitobiase-like | 6.58e-79 | 350 | 715 | 1 | 355 | The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
pfam01301 | Glyco_hydro_35 | 1.13e-78 | 917 | 1255 | 1 | 315 | Glycosyl hydrolases family 35. |
pfam00728 | Glyco_hydro_20 | 2.86e-71 | 350 | 704 | 1 | 345 | Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold. |
COG3525 | Chb | 2.39e-58 | 290 | 726 | 206 | 637 | N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QQM67568.1 | 0.0 | 894 | 2197 | 61 | 1346 |
AOZ72117.1 | 0.0 | 895 | 2196 | 54 | 1312 |
VEG55570.1 | 0.0 | 894 | 2175 | 62 | 1330 |
QWW19060.1 | 0.0 | 894 | 2171 | 39 | 1303 |
QGH69595.1 | 0.0 | 901 | 2167 | 67 | 1319 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
6YXZ_JJJ | 2.93e-129 | 30 | 828 | 4 | 808 | ChainJJJ, Beta-N-acetylhexosaminidase [Bifidobacterium bifidum] |
6Z14_JJJ | 7.31e-129 | 30 | 828 | 4 | 808 | ChainJJJ, Beta-N-acetylhexosaminidase [Bifidobacterium bifidum] |
1HP4_A | 8.25e-64 | 195 | 739 | 21 | 511 | ChainA, Beta-n-acetylhexosaminidase [Streptomyces plicatus],1HP5_A Chain A, Beta-n-acetylhexosaminidase [Streptomyces plicatus],1JAK_A Chain A, Beta-N-acetylhexosaminidase [Streptomyces plicatus],1M01_A Chain A, Beta-N-acetylhexosaminidase [Streptomyces plicatus],5FCZ_A Chain A, B-N-acetylhexosaminidase [Streptomyces plicatus],5FD0_A Chain A, B-N-acetylhexosaminidase [Streptomyces plicatus] |
1M04_A | 3.76e-63 | 195 | 739 | 21 | 511 | ChainA, Beta-N-acetylhexosaminidase [Streptomyces plicatus] |
1M03_A | 9.34e-63 | 195 | 739 | 21 | 511 | ChainA, Beta-N-acetylhexosaminidase [Streptomyces plicatus] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
A1D1Z9 | 7.50e-63 | 911 | 1553 | 46 | 645 | Probable beta-galactosidase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=lacA PE=3 SV=1 |
Q4WG05 | 1.39e-62 | 911 | 1269 | 42 | 401 | Probable beta-galactosidase E OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=lacE PE=3 SV=1 |
B0XXE7 | 1.39e-62 | 911 | 1269 | 42 | 401 | Probable beta-galactosidase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=lacE PE=3 SV=1 |
A1DJ58 | 5.82e-62 | 911 | 1269 | 42 | 401 | Probable beta-galactosidase E OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=lacE PE=3 SV=1 |
B0XMP7 | 9.84e-62 | 911 | 1334 | 46 | 452 | Probable beta-galactosidase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=lacA PE=3 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000316 | 0.998858 | 0.000190 | 0.000247 | 0.000192 | 0.000161 |
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