CAZyme Information: MGYG000000319_01480

Basic Information

• Species: Pygmaiobacter massiliensis
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Pygmaiobacter; Pygmaiobacter massiliensis
• CAZyme ID: MGYG000000319_01480
• CAZy Family: GT2
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
621	MGYG000000319_80|CGC1	69345.63	6.0911

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000319	2608342	MAG	Sweden	Europe

• Gene Location: Start: 4823; End: 6688 Strand: -

Full Sequence      

MNPSETNQQMNEQDTVGKAIKRNLSPKKALDLAGRGIHCLTTRGVEATGREISFRVNLML
KRDPWQHRADLPLRRELAQQRKTTLPYMPLISIVVPVYNTPLVYLKELVECVLGQSYAHL
ELVLVNASSADHPEVGEYCATLTDPRVNCIRLAKNGGIAANTNLGLAEASGDYVALLDHD
DIISPNALFEVVQAINETQAELLYSDEIVLGSDLKALKDYHFKPDYSPDTLRGCNYITHF
LVFKHALLEQIGGGESKEYDGAQDYDLILRLSEKANKVHHIPKVLYYWRSHENSTASDMS
AKPYAIEAGAKAIAAHLKRVGLSGIVTPIKDGPGSYRVSYEINGDPMISVMIPSKDHVED
LRRCLDSLYARAGHQNFEVLVLENNSTEPETLAFYEQELPKYPRCRLLIYEGPFNFSAVN
NFGAKQAKGEHLLLLNNDIEFLSDNVLTELLMYSQREDVGAVGAKLYYPDETIQHAGVFL
GLGGTAGHSHKGLPRETKGNMYRVATVQNLSAVTGACLMVKKSLYEALGGLDEENFAVSY
NDVDFCLKLREKGLLNVFTPFVEAYHYESKSRGLDTSGPNAERYAAEKQRFIEKYQAFLG
EGGDPYYNPHLTLKYENYGYK

Enzyme Prediction     

No EC number prediction in MGYG000000319_01480.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT2	92	201	2.5e-23	0.6411764705882353
GT2	349	477	1.1e-16	0.7411764705882353

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd04184	GT2_RfbC_Mx_like	1.51e-89	89	289	1	201	Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
cd04186	GT_2_like_c	1.71e-42	350	568	1	166	Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
COG1216	GT2	9.71e-27	346	573	3	226	Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism].
cd06433	GT_2_WfgS_like	3.52e-22	92	295	1	200	WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
pfam00535	Glycos_transf_2	3.81e-22	92	247	1	164	Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUC66692.1	1.67e-182	80	621	407	946
QMW89744.1	5.75e-181	12	621	7	615
BBK78193.1	5.75e-181	12	621	7	615
QNM02106.1	1.08e-176	78	621	101	678
CAB1243278.1	5.55e-175	19	621	431	1033

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5HEA_A	2.05e-09	90	225	6	127	CgTstructure in hexamer [Streptococcus parasanguinis FW213],5HEA_B CgT structure in hexamer [Streptococcus parasanguinis FW213],5HEA_C CgT structure in hexamer [Streptococcus parasanguinis FW213],5HEC_A CgT structure in dimer [Streptococcus parasanguinis FW213],5HEC_B CgT structure in dimer [Streptococcus parasanguinis FW213]
3BCV_A	2.23e-08	88	183	4	97	Crystalstructure of a putative glycosyltransferase from Bacteroides fragilis [Bacteroides fragilis NCTC 9343],3BCV_B Crystal structure of a putative glycosyltransferase from Bacteroides fragilis [Bacteroides fragilis NCTC 9343]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P55465	1.04e-129	89	614	366	891	Uncharacterized protein y4gI OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a03550 PE=4 SV=1
Q50864	2.07e-105	72	613	302	833	O-antigen biosynthesis protein RfbC OS=Myxococcus xanthus OX=34 GN=rfbC PE=4 SV=1
Q4UM29	2.32e-16	87	450	12	393	Uncharacterized glycosyltransferase RF_0543 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=RF_0543 PE=3 SV=1
Q1RIM7	4.73e-16	87	534	11	483	Uncharacterized glycosyltransferase RBE_0706 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=RBE_0706 PE=3 SV=1
Q92IF9	1.66e-15	87	534	12	485	Uncharacterized glycosyltransferase RC0461 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=RC0461 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000049	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000319_01480.