CAZyme Information: MGYG000000322_00578

Basic Information

• Species: Odoribacter sp900544025
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Marinifilaceae; Odoribacter; Odoribacter sp900544025
• CAZyme ID: MGYG000000322_00578
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
639		72467.53	7.4307

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000322	3470887	MAG	Sweden	Europe

• Gene Location: Start: 41982; End: 43901 Strand: +

Full Sequence      

MLHNLLFFTIFANQTFLIAMRYISYFLLAFALLASPVTQGKIYHLRNYGLQPGSDRNTTS
VLAAALQRIIAENPTDSRYVIKFPKGKYNFFPTQEMEKVYYISNHDQDNPKNVGIAIEGM
KNIVFDGQGSEFIFHGRMLPLSIVDCKNCTFKNFSIDFANPHITQFKIVANDPEAKKITL
EVAPWVKYKIENGVFVAYGEGWQHTPQACIAFEGDTKHVVYNTSDLGINIRQVKEIAPRT
IVAENWQQPKLKPGTVIAARTWHRPTPGIFMYRSDDTRLENIRVHYAEGMGLLAQLCENI
TLDGFGVCLKGKNDPRYFTTQADATHFSGCKGKITSINGLYEGMMDDAINIHGTYLKITE
RIDDHTLIGTYMHSQSWGFEWGRPGDKVQFIKSSTMELTESGNEIAAIEPVGQSGTHGAR
SFRITFTRPIEKIITTQEGFGIENLEWTPEVLFAHNTIRNNRARGALFSTPKKTVVENNL
FDHTSGTAILLCGDCNGWYETGACRDVLIRNNTFINALTSLFQFTNAIISIYPEIPNLKE
QVKYFHGGTDVPGIVIENNRFETFDAPILYAKSVNNLTFKNNKIIHNQAYPAFHWNKHPF
FFEQATNVSILFNDFDIPLDSQRDIRLETNHTKSVIQIK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	43	610	2.1e-225	0.9908759124087592

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	0.001	433	583	40	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229	Beta_helix	0.002	450	596	10	146	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT50242.1	4.37e-284	39	628	19	601
EDN88509.1	3.37e-281	39	628	19	601
QCQ35996.1	3.02e-280	39	610	23	593
QLK82307.1	4.96e-279	39	610	23	593
QCQ44917.1	4.96e-279	39	610	23	593

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	6.27e-77	41	614	26	596	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	3.31e-76	41	614	26	596	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q64XV2	2.31e-278	39	610	23	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaB PE=3 SV=1
Q5LGZ8	3.28e-278	39	610	23	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaB PE=1 SV=1
A6KWM0	6.84e-277	20	610	1	590	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB1 PE=3 SV=1
A6LFT2	1.57e-268	28	630	11	608	Alpha-1,3-galactosidase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=glaB PE=3 SV=1
A6L2M8	6.75e-261	32	616	13	596	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB2 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.724473	0.273587	0.000968	0.000182	0.000166	0.000632

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000322_00578.