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CAZyme Information: MGYG000000330_00638

You are here: Home > Sequence: MGYG000000330_00638

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lentilactobacillus parabuchneri
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus; Lentilactobacillus parabuchneri
CAZyme ID MGYG000000330_00638
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
431 MGYG000000330_3|CGC1 47841.03 5.7656
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000330 2487416 MAG Sweden Europe
Gene Location Start: 72161;  End: 73456  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000330_00638.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 28 379 2.6e-86 0.9230769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.60e-68 8 360 91 466
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 4.24e-34 88 378 44 311
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 1.56e-27 90 344 108 331
Probable polygalacturonase At3g15720
PLN02188 PLN02188 1.44e-25 95 378 121 386
polygalacturonase/glycoside hydrolase family protein
PLN02793 PLN02793 3.32e-24 95 367 142 391
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QOJ85881.1 2.76e-305 1 431 1 431
QOP50312.1 2.76e-305 1 431 1 431
APR07177.1 2.76e-305 1 431 1 431
QYN52503.1 4.60e-169 13 424 47 458
QYN58307.1 1.18e-168 13 424 44 455

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 3.83e-42 14 367 42 407
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.47e-23 14 370 59 425
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 1.06e-20 16 307 26 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 3.47e-18 16 317 173 510
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4C2L_A 1.87e-09 14 343 30 331
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 4.35e-52 11 378 78 432
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 6.77e-36 153 359 37 249
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
P43212 6.60e-28 72 372 114 402
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1
Q7M1E7 2.93e-25 72 372 114 402
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
Q9FY19 6.96e-25 72 367 115 398
Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000027 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000330_00638.