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CAZyme Information: MGYG000000387_01391

You are here: Home > Sequence: MGYG000000387_01391

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; ;
CAZyme ID MGYG000000387_01391
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
603 67505.33 4.4496
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000387 2488147 MAG Sweden Europe
Gene Location Start: 16668;  End: 18479  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000387_01391.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 122 492 9.1e-70 0.9353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.75e-67 102 415 98 398
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.85e-21 252 492 85 302
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 1.42e-10 251 433 137 308
Probable polygalacturonase At3g15720
PLN02218 PLN02218 4.09e-07 252 475 192 407
polygalacturonase ADPG
PLN02188 PLN02188 5.23e-06 188 473 122 371
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QHZ45626.1 1.42e-103 102 503 39 431
ATH95504.1 2.27e-103 50 503 5 431
ANY95978.1 3.69e-103 123 501 85 459
ALM44502.1 3.69e-103 123 501 85 459
QXJ49378.1 3.69e-103 123 501 85 459

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.51e-82 123 469 59 403
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 9.36e-58 102 498 60 448
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 1.06e-13 100 494 19 375
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 9.81e-37 102 437 78 382
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P26509 6.87e-13 100 494 45 401
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P27644 1.07e-12 260 416 30 187
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
P18192 5.09e-12 78 494 18 401
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P47180 7.01e-10 245 445 117 312
Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PGU1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000001 1.000036 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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