logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000398_01660

You are here: Home > Sequence: MGYG000000398_01660

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; TF01-11;
CAZyme ID MGYG000000398_01660
CAZy Family GH3
CAZyme Description Xylan 1,4-beta-xylosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1089 MGYG000000398_10|CGC1 121927.27 4.6396
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000398 2936252 MAG Sweden Europe
Gene Location Start: 111352;  End: 114621  Strand: +

Full Sequence      Download help

MSEKNINQNN  PLWDTEKTME  ERLDYLVSEL  TLEEKFSCLG  TGNPTIERLG  IPSFYVGCEG60
AHGLQMRHDQ  SFDKGEPQPT  TIFPNPVGMS  ATWDPELIRK  AGEVVGTEAR  AVFEKDGRRG120
GLCLWAPTID  MERDPRWGRT  EEAYGEDPYL  TGKMASAYIR  GMRGDGETIR  CGATLKHFYA180
NNVEDGRVWK  SSSIDPRNKQ  EYYLEPFRRA  VTEGGAEAMM  TSYNEINGVP  AILNHEVQKI240
AKEQWGVHHV  VCDGGDMKQT  VDCHHYFGSH  TETIAEGLKA  GIDCFTDDID  AVIEGAREAY300
ELGMIDMADI  DRALRCHFST  LIRLGLFDPQ  ETVPNYGLNL  PEFQKLAGEV  TAESVVLLKN360
DEIDGQKLLP  LDKTQITSDH  KIAVIGPSAE  EWFLDWYSGI  PPYAVTPLQG  IRDAISHPEN420
VIFESGVPKL  KIACGDKYLG  LLEDGETLGL  VEEDKAEIFE  SVLWDKEQLT  LKAESNGRYL480
TALDGCDEDE  VYRGGIFKAC  SERAFGWFVK  EAFHAQVNLT  DLKETEEKGM  SLAVGSHFKS540
ILENGEEFLL  KAWNSGGLYV  DGQNRIRVRD  GQGFAEDGEV  RRIVSCTDVH  GHQVFAEDFK600
AERSGGIYET  VTGQKYRTLP  ALCPVLVKDG  IQAAREAAAQ  ADTVIYVGGA  HPMITCKEEV660
DRKDIDFPVY  QRQLLQAVYQ  ENHRVIAALV  TSVPYAIGWE  KQHLPAILTM  AGGSMELGNG720
LADILFGKKA  PAGRLNMTWY  RDTEQLPDMD  DYDIIQKERT  YQYFKGEVLY  PFGYGLTYTP780
TEIDALAAKV  SGDEKYIDVT  CTVRNMGQVR  DALPPQDEVV  QIYYTKKDSA  VKRPIRTLTA840
FKRVKDLEAG  EERTVSFRIP  VEDLMYYDTI  QRKKLLEPGI  YEIQAGHSSA  DIDVVVTATL900
KGQERGYRDG  GLWQLADHYD  RSRNGYLWEG  HMGYDSVAHR  ADAHVPEELF  EKVGGLWQNI960
NEVTREEQSG  ERLDDCLILE  YDRVCLPEET  GYFVLDADAV  PESTVDVFIN  DIHNASYIVP1020
DFGDLSGAGD  NPGWAAAATA  KNAPHGRIFR  QLLIPVEGLE  ASKEPVALRL  RCQGDLRICR1080
WRFVKGNTK1089

Enzyme Prediction      help

No EC number prediction in MGYG000000398_01660.

CAZyme Signature Domains help

Created with Snap54108163217272326381435490544598653707762816871925980103446284GH3
Family Start End Evalue family coverage
GH3 46 284 2.9e-60 0.9675925925925926

CDD Domains      download full data without filtering help

Created with Snap54108163217272326381435490544598653707762816871925980103448892PRK1509848415BglX11412PLN0308048315Glyco_hydro_3642778Glyco_hydro_3_C
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK15098 PRK15098 1.02e-71 48 892 101 757
beta-glucosidase BglX.
COG1472 BglX 7.12e-66 48 415 57 387
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PLN03080 PLN03080 1.01e-61 11 412 41 455
Probable beta-xylosidase; Provisional
pfam00933 Glyco_hydro_3 2.43e-39 48 315 63 311
Glycosyl hydrolase family 3 N terminal domain.
pfam01915 Glyco_hydro_3_C 3.52e-29 642 778 92 216
Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.

CAZyme Hits      help

Created with Snap54108163217272326381435490544598653707762816871925980103411937ABX43682.1|GH33952CBL12929.1|GH33952CBL10090.1|GH33952VCV20176.1|GH310924BBF45253.1|GH3
Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43682.1 7.30e-273 11 937 10 871
CBL12929.1 3.91e-262 3 952 2 869
CBL10090.1 3.91e-262 3 952 2 869
VCV20176.1 3.91e-262 3 952 2 869
BBF45253.1 3.25e-242 10 924 3 826

PDB Hits      download full data without filtering help

Created with Snap541081632172723263814354905445986537077628168719259801034238923AC0_A238923ABZ_A488925TF0_A818936R5I_A818936R5O_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3AC0_A 3.04e-64 23 892 6 828
Crystalstructure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose [Kluyveromyces marxianus],3AC0_B Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose [Kluyveromyces marxianus],3AC0_C Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose [Kluyveromyces marxianus],3AC0_D Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose [Kluyveromyces marxianus]
3ABZ_A 5.36e-61 23 892 6 828
Crystalstructure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus [Kluyveromyces marxianus],3ABZ_B Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus [Kluyveromyces marxianus],3ABZ_C Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus [Kluyveromyces marxianus],3ABZ_D Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus [Kluyveromyces marxianus]
5TF0_A 3.94e-53 48 892 80 743
CrystalStructure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis [Bacteroides intestinalis DSM 17393],5TF0_B Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis [Bacteroides intestinalis DSM 17393]
6R5I_A 2.61e-51 81 893 86 726
ChainA, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5I_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
6R5O_A 1.13e-50 81 893 86 726
ChainA, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5O_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5R_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5T_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5T_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5U_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5U_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5V_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5V_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits      download full data without filtering help

Created with Snap54108163217272326381435490544598653707762816871925980103423900sp|P27034|BGLS_RHIRD11894sp|D5EY15|XYL3A_PRER214901sp|T2KMH0|PLH24_FORAG23892sp|P07337|BGLS_KLUMA14885sp|A1DNN8|BGLJ_NEOFI
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27034 1.71e-73 23 900 2 810
Beta-glucosidase OS=Rhizobium radiobacter OX=358 GN=cbg-1 PE=3 SV=1
D5EY15 2.15e-70 11 894 23 854
Xylan 1,4-beta-xylosidase OS=Prevotella ruminicola (strain ATCC 19189 / JCM 8958 / 23) OX=264731 GN=xyl3A PE=1 SV=1
T2KMH0 1.74e-65 14 901 28 723
Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22130 PE=1 SV=1
P07337 5.53e-63 23 892 6 828
Beta-glucosidase OS=Kluyveromyces marxianus OX=4911 PE=3 SV=1
A1DNN8 2.51e-61 14 885 5 840
Probable beta-glucosidase J OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=bglJ PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000398_01660.