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CAZyme Information: MGYG000000399_00246

You are here: Home > Sequence: MGYG000000399_00246

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; ;
CAZyme ID MGYG000000399_00246
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1047 MGYG000000399_2|CGC1 113809.96 4.7128
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000399 1208519 MAG Sweden Europe
Gene Location Start: 51970;  End: 55113  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000399_00246.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 353 562 2.1e-19 0.5076923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.00e-25 299 533 83 323
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 2.31e-08 298 522 67 267
polygalacturonase ADPG
pfam12708 Pectate_lyase_3 1.65e-04 300 337 3 41
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGA23464.1 5.39e-121 55 783 84 799
QCD41820.1 5.59e-82 81 727 239 878
ADB48561.1 9.65e-39 289 871 20 573
QGQ94767.1 3.78e-30 306 800 46 533
ADB48560.1 1.81e-22 289 769 20 488

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.14e-08 294 535 23 276
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8RY29 1.38e-07 298 522 67 267
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000723 0.998425 0.000250 0.000228 0.000187 0.000165

TMHMM  Annotations      download full data without filtering help

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