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CAZyme Information: MGYG000000412_00864
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Succinivibrio sp000431835 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinivibrio; Succinivibrio sp000431835 | |||||||||||
| CAZyme ID | MGYG000000412_00864 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Translation initiation factor IF-2 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 146120; End: 148648 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK05306 | infB | 0.0 | 126 | 840 | 41 | 746 | translation initiation factor IF-2; Validated |
| CHL00189 | infB | 0.0 | 262 | 841 | 158 | 742 | translation initiation factor 2; Provisional |
| TIGR00487 | IF-2 | 0.0 | 259 | 841 | 1 | 586 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| COG0532 | InfB | 0.0 | 344 | 842 | 3 | 508 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| cd01887 | IF2_eIF5B | 8.79e-101 | 347 | 510 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 8.13e-163 | 259 | 837 | 266 | 855 |
| CAE6204650.1 | 1.98e-12 | 350 | 550 | 751 | 968 |
| AKA01905.1 | 6.41e-06 | 347 | 529 | 11 | 201 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 5.03e-298 | 184 | 841 | 231 | 889 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 5.06e-258 | 337 | 841 | 1 | 508 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 1.42e-255 | 344 | 840 | 2 | 501 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 4.47e-141 | 270 | 837 | 4 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 2.64e-140 | 270 | 837 | 4 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7MQE1 | 3.28e-299 | 175 | 842 | 235 | 903 | Translation initiation factor IF-2 OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=infB PE=3 SV=1 |
| B1LFS0 | 1.95e-297 | 184 | 841 | 231 | 889 | Translation initiation factor IF-2 OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=infB PE=3 SV=1 |
| Q31W47 | 2.09e-297 | 184 | 841 | 223 | 881 | Translation initiation factor IF-2 OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=infB PE=3 SV=1 |
| Q83JF9 | 2.09e-297 | 184 | 841 | 223 | 881 | Translation initiation factor IF-2 OS=Shigella flexneri OX=623 GN=infB PE=3 SV=1 |
| C4ZSQ9 | 2.76e-297 | 184 | 841 | 231 | 889 | Translation initiation factor IF-2 OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |