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CAZyme Information: MGYG000000412_01015
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Succinivibrio sp000431835 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinivibrio; Succinivibrio sp000431835 | |||||||||||
| CAZyme ID | MGYG000000412_01015 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 64923; End: 66254 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 11 | 371 | 6.6e-121 | 0.9915254237288136 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 1.83e-162 | 11 | 389 | 5 | 378 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 1.68e-140 | 11 | 386 | 5 | 379 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.07e-116 | 11 | 382 | 2 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 5.13e-112 | 11 | 382 | 9 | 382 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 2.30e-57 | 6 | 335 | 226 | 551 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIJ05384.1 | 7.29e-111 | 9 | 392 | 8 | 385 |
| QWL03673.1 | 7.29e-111 | 9 | 392 | 8 | 385 |
| QSX31084.1 | 9.99e-111 | 2 | 382 | 1 | 375 |
| BCV37365.1 | 1.03e-110 | 9 | 392 | 8 | 385 |
| QDF67758.1 | 1.24e-110 | 7 | 386 | 5 | 378 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8S_A | 1.18e-95 | 2 | 385 | 1 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
| 5W8N_A | 1.67e-95 | 2 | 385 | 1 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A8FY29 | 5.47e-110 | 10 | 386 | 9 | 379 | Lipid-A-disaccharide synthase OS=Shewanella sediminis (strain HAW-EB3) OX=425104 GN=lpxB PE=3 SV=1 |
| A7MY02 | 3.41e-108 | 7 | 388 | 4 | 379 | Lipid-A-disaccharide synthase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=lpxB PE=3 SV=1 |
| B1KNT0 | 2.27e-107 | 10 | 387 | 9 | 380 | Lipid-A-disaccharide synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=lpxB PE=3 SV=1 |
| A0KZ10 | 2.34e-107 | 9 | 386 | 8 | 379 | Lipid-A-disaccharide synthase OS=Shewanella sp. (strain ANA-3) OX=94122 GN=lpxB PE=3 SV=1 |
| A1S4Q3 | 3.02e-107 | 2 | 382 | 1 | 375 | Lipid-A-disaccharide synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000060 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |