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CAZyme Information: MGYG000000437_01184
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Alistipes sp001941065 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes sp001941065 | |||||||||||
| CAZyme ID | MGYG000000437_01184 | |||||||||||
| CAZy Family | PL6 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 17339; End: 19609 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL6 | 33 | 391 | 3.7e-123 | 0.9596774193548387 |
| PL6 | 444 | 655 | 1.1e-36 | 0.5994236311239193 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd14251 | PL-6 | 2.01e-166 | 33 | 389 | 8 | 364 | Polysaccharide Lyase Family 6. Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate. |
| pfam14592 | Chondroitinas_B | 5.48e-114 | 35 | 389 | 10 | 378 | Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate. |
| pfam13229 | Beta_helix | 1.37e-04 | 575 | 718 | 8 | 136 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUT26279.1 | 0.0 | 22 | 752 | 24 | 753 |
| QIU93442.1 | 0.0 | 22 | 750 | 24 | 751 |
| QNL39961.1 | 0.0 | 22 | 752 | 24 | 753 |
| QNT66846.1 | 3.58e-236 | 22 | 715 | 24 | 711 |
| QEC55801.1 | 8.23e-225 | 26 | 741 | 19 | 739 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7DMK_A | 3.13e-224 | 29 | 737 | 17 | 727 | ChainA, BcAlyPL6 [Bacteroides clarus],7DMK_B Chain B, BcAlyPL6 [Bacteroides clarus],7DMK_C Chain C, BcAlyPL6 [Bacteroides clarus],7DMK_D Chain D, BcAlyPL6 [Bacteroides clarus] |
| 5GKD_A | 3.45e-131 | 35 | 678 | 14 | 678 | Structureof PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_B Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_C Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_D Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis] |
| 5GKQ_A | 2.67e-130 | 35 | 678 | 14 | 678 | Structureof PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6],5GKQ_B Structure of PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6] |
| 7O7T_A | 2.62e-124 | 35 | 678 | 13 | 678 | ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c] |
| 7O77_A | 2.62e-124 | 35 | 678 | 13 | 678 | ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q06365 | 2.02e-75 | 41 | 402 | 2 | 354 | Alginate lyase OS=Pseudomonas sp. (strain OS-ALG-9) OX=86038 GN=aly PE=3 SV=1 |
| Q46079 | 9.17e-25 | 36 | 338 | 38 | 349 | Chondroitinase-B OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=cslB PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000298 | 0.998947 | 0.000229 | 0.000166 | 0.000165 | 0.000163 |