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CAZyme Information: MGYG000000444_01982

You are here: Home > Sequence: MGYG000000444_01982

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Borkfalkia ceftriaxoniphila
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; Borkfalkia; Borkfalkia ceftriaxoniphila
CAZyme ID MGYG000000444_01982
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
665 MGYG000000444_64|CGC1 72259.7 4.4388
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000444 2535942 MAG Sweden Europe
Gene Location Start: 2381;  End: 4378  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000444_01982.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 369 644 2.8e-40 0.8123076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.67e-14 419 582 237 402
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 5.15e-05 385 642 44 305
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 6.18e-05 419 568 137 291
Probable polygalacturonase At3g15720
PLN02155 PLN02155 0.002 422 491 147 218
polygalacturonase
PLN02793 PLN02793 0.009 425 491 182 250
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNK57811.1 2.51e-123 37 653 31 640
BBH22092.1 8.54e-123 1 655 2 649
QTH44486.1 6.43e-113 38 656 35 650
QJD87459.1 1.65e-112 38 656 35 648
AMB60207.1 7.62e-100 103 651 4 557

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 6.92e-11 419 576 189 359
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000006 1.000051 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000444_01982.