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CAZyme Information: MGYG000000468_02167
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UMGS1696 sp900554225 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; CAG-272; UMGS1696; UMGS1696 sp900554225 | |||||||||||
| CAZyme ID | MGYG000000468_02167 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1081; End: 4257 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK05306 | infB | 0.0 | 436 | 1058 | 131 | 745 | translation initiation factor IF-2; Validated |
| CHL00189 | infB | 0.0 | 419 | 1058 | 90 | 740 | translation initiation factor 2; Provisional |
| TIGR00487 | IF-2 | 0.0 | 477 | 1058 | 2 | 584 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| COG0532 | InfB | 0.0 | 559 | 1058 | 1 | 505 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| cd01887 | IF2_eIF5B | 2.72e-99 | 564 | 726 | 1 | 168 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 1.01e-190 | 482 | 1056 | 280 | 855 |
| CAE6204650.1 | 3.21e-13 | 568 | 769 | 752 | 970 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 5.72e-201 | 481 | 1058 | 310 | 887 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 1.46e-187 | 562 | 1058 | 9 | 506 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 4.37e-187 | 562 | 1058 | 3 | 500 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 2.09e-155 | 487 | 1056 | 4 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 3.14e-155 | 487 | 1056 | 4 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B8I6E7 | 9.06e-239 | 481 | 1058 | 582 | 1161 | Translation initiation factor IF-2 OS=Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) OX=394503 GN=infB PE=3 SV=1 |
| A3DE44 | 1.28e-238 | 481 | 1056 | 456 | 1033 | Translation initiation factor IF-2 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=infB PE=3 SV=1 |
| A0Q0Q7 | 2.91e-236 | 475 | 1056 | 100 | 678 | Translation initiation factor IF-2 OS=Clostridium novyi (strain NT) OX=386415 GN=infB PE=3 SV=1 |
| Q895J8 | 6.23e-236 | 464 | 1058 | 87 | 682 | Translation initiation factor IF-2 OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=infB PE=3 SV=1 |
| Q8RA37 | 3.75e-235 | 481 | 1058 | 129 | 707 | Translation initiation factor IF-2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000030 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |