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CAZyme Information: MGYG000000480_01353

You are here: Home > Sequence: MGYG000000480_01353

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-312 sp900546565
Lineage Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312; CAG-312 sp900546565
CAZyme ID MGYG000000480_01353
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
384 MGYG000000480_35|CGC1 42045.98 8.5964
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000480 1940095 MAG Fiji Oceania
Gene Location Start: 4099;  End: 5253  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000480_01353.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 118 350 3.7e-21 0.6615384615384615

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.94e-10 39 348 97 402
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 5.58e-08 121 269 48 204
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam13229 Beta_helix 7.58e-04 153 281 2 119
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWO01000.1 9.80e-118 31 362 5 331
APZ82864.1 2.40e-30 31 362 26 339
BBZ75998.1 5.12e-06 153 305 159 287

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000263 0.999092 0.000158 0.000169 0.000148 0.000136

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000480_01353.