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CAZyme Information: MGYG000000556_00216

You are here: Home > Sequence: MGYG000000556_00216

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp003469205
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp003469205
CAZyme ID MGYG000000556_00216
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
531 MGYG000000556_8|CGC1 58039.53 4.7643
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000556 1959616 MAG China Asia
Gene Location Start: 12435;  End: 14030  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000556_00216.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 106 477 3.9e-66 0.916923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.82e-96 82 526 84 529
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.62e-24 188 414 48 255
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 4.56e-22 73 417 60 363
polygalacturonase ADPG
PLN03003 PLN03003 2.18e-21 174 428 97 318
Probable polygalacturonase At3g15720
PLN03010 PLN03010 2.58e-20 82 438 48 348
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATP54717.1 0.0 1 531 1 531
QIA34431.1 0.0 1 531 1 531
QUC03565.1 6.06e-281 1 530 1 529
QOL31033.1 3.62e-234 1 528 1 526
QOL34309.1 7.28e-234 1 528 1 526

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 9.76e-38 65 380 11 335
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 6.46e-31 83 380 47 344
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 3.18e-26 74 422 150 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 6.40e-58 236 506 23 295
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 6.09e-35 85 523 67 481
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 1.70e-25 43 422 124 507
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P48978 9.37e-21 71 427 88 400
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1
P49063 2.69e-20 81 408 70 353
Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000087 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000556_00216.