Species | Gemmiger variabilis_A | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger variabilis_A | |||||||||||
CAZyme ID | MGYG000000573_00190 | |||||||||||
CAZy Family | GH28 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 6252; End: 7805 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH28 | 105 | 472 | 2.5e-74 | 0.9292307692307692 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG5434 | Pgu1 | 6.84e-105 | 5 | 449 | 5 | 467 | Polygalacturonase [Carbohydrate transport and metabolism]. |
pfam00295 | Glyco_hydro_28 | 1.01e-26 | 190 | 462 | 52 | 307 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
PLN02218 | PLN02218 | 1.51e-21 | 81 | 399 | 68 | 359 | polygalacturonase ADPG |
PLN03010 | PLN03010 | 1.15e-18 | 85 | 394 | 51 | 320 | polygalacturonase |
PLN03003 | PLN03003 | 1.56e-18 | 81 | 414 | 24 | 318 | Probable polygalacturonase At3g15720 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
AXB29658.1 | 2.38e-219 | 1 | 517 | 1 | 518 |
CBL00656.1 | 5.52e-218 | 1 | 517 | 1 | 518 |
ATP00558.1 | 4.50e-217 | 1 | 517 | 1 | 518 |
QIA43717.1 | 4.50e-217 | 1 | 517 | 1 | 518 |
AXA82452.1 | 4.23e-215 | 1 | 517 | 1 | 518 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
3JUR_A | 2.47e-28 | 86 | 462 | 33 | 414 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
2UVE_A | 5.19e-20 | 46 | 468 | 115 | 576 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
1BHE_A | 9.64e-18 | 88 | 394 | 18 | 314 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
A7PZL3 | 2.56e-32 | 86 | 465 | 68 | 431 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
P27644 | 9.39e-30 | 234 | 447 | 35 | 249 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
P15922 | 3.65e-18 | 51 | 432 | 115 | 529 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
P18192 | 4.71e-18 | 34 | 394 | 5 | 340 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
P26509 | 1.52e-17 | 34 | 394 | 5 | 340 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000035 | 0.000005 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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