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CAZyme Information: MGYG000000582_00113

You are here: Home > Sequence: MGYG000000582_00113

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lactococcus garvieae
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus garvieae
CAZyme ID MGYG000000582_00113
CAZy Family GH18
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
493 MGYG000000582_1|CGC3 53901.08 4.7927
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000582 2064828 MAG Madagascar Africa
Gene Location Start: 115542;  End: 117023  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.14

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH18 42 342 1.1e-29 0.9932432432432432

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3469 Chi1 0.0 26 349 9 330
Chitinase [Carbohydrate transport and metabolism].
cd02871 GH18_chitinase_D-like 8.29e-100 43 346 1 311
GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
pfam00704 Glyco_hydro_18 3.25e-18 44 326 1 307
Glycosyl hydrolases family 18.
cd00598 GH18_chitinase-like 3.60e-15 45 230 1 177
The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.
COG3979 COG3979 2.63e-13 356 491 2 147
Chitodextrinase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAK58509.1 0.0 1 493 1 493
BAK60504.1 0.0 1 493 1 493
QSQ99466.1 0.0 1 493 1 493
QSR13488.1 0.0 1 493 1 493
BAV01768.1 0.0 1 493 1 493

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3IAN_A 1.98e-193 42 353 4 315
ChainA, Chitinase [Lactococcus lactis subsp. lactis]
4AXN_A 2.72e-131 19 348 1 327
Hallmarksof processive and non-processive glycoside hydrolases revealed from computational and crystallographic studies of the Serratia marcescens chitinases [Serratia marcescens],4AXN_B Hallmarks of processive and non-processive glycoside hydrolases revealed from computational and crystallographic studies of the Serratia marcescens chitinases [Serratia marcescens]
4HMC_A 2.00e-116 42 491 8 528
Crystalstructure of cold-adapted chitinase from Moritella marina [Moritella marina],4HMD_A Crystal structure of cold-adapted chitinase from Moritella marina with a reaction intermediate - oxazolinium ion (NGO) [Moritella marina],4HME_A Crystal structure of cold-adapted chitinase from Moritella marina with a reaction product - NAG2 [Moritella marina]
4MB3_A 5.62e-116 42 491 8 528
Crystalstructure of E153Q mutant of cold-adapted chitinase from Moritella marina [Moritella marina],4MB4_A Crystal structure of E153Q mutant of cold-adapted chitinase from Moritella complex with Nag4 [Moritella marina],4MB5_A Crystal structure of E153Q mutant of cold-adapted chitinase from Moritella complex with Nag5 [Moritella marina]
4W5Z_A 3.93e-114 24 344 12 334
Highresolution crystal structure of catalytic domain of Chitinase 60 from psychrophilic bacteria Moritella marina. [Moritella marina]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q838S2 4.80e-129 22 348 20 347
Chitinase OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0361 PE=1 SV=1
P27050 2.80e-38 43 350 190 513
Chitinase D OS=Niallia circulans OX=1397 GN=chiD PE=1 SV=4
E9F7R6 1.32e-33 22 332 20 336
Endochitinase 4 OS=Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075) OX=655844 GN=chi4 PE=3 SV=1
Q8NJQ5 1.90e-31 19 332 15 333
Endochitinase 37 OS=Trichoderma harzianum OX=5544 GN=chit37 PE=1 SV=1
C9WJD0 4.80e-25 69 329 17 282
Endochitinase 4 (Fragment) OS=Metarhizium anisopliae OX=5530 GN=chi4 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001345 0.997167 0.000344 0.000443 0.000359 0.000307

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000582_00113.