logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000582_00614

You are here: Home > Sequence: MGYG000000582_00614

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lactococcus garvieae
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus garvieae
CAZyme ID MGYG000000582_00614
CAZy Family CBM50
CAZyme Description Vitamin B12 import ATP-binding protein BtuD
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
469 MGYG000000582_4|CGC2 52209.3 8.7611
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000582 2064828 MAG Madagascar Africa
Gene Location Start: 122193;  End: 123602  Strand: -

Full Sequence      Download help

MKNSKIKAEY  LSKKFEMLPV  KDTRNKAKSL  IGANEKSQKD  FWALRNVSFE  IHEGECVGVI60
GLNGAGKSTL  SNIISGQIAQ  TTGQVEINGD  VSIIAANAGM  QNNLSGRENI  RLKGLMVGMK120
NKEIKAKMQD  IIDFSELGPF  IDQPVKTYSS  GMKAKLGFSI  MAHQDPDIMI  IDEGLSVGDK180
TFVDKSKKKM  FEFRDQGKTI  LMVSHDMRTV  KEWSDRVIWL  NYGEVKAYGR  PEEVIPEYEK240
FVRWFKSLSK  KEQEAYKQEQ  RQAQFDYSVE  ELKKEIISQS  SSKSRRVNRE  VTQSLKKKKD300
NHKLSFFSKI  VVALCMLVFL  WITLVSLSNT  TLKKSVQHPV  KFFSQNLFKA  REVSREDKQT360
SKTTESTITT  SSSSENEEAI  SQSTSQPSTS  ESVTSTSESE  PGTAEETTYV  IQAGESLGSI420
AESKGLTVDA  IQAVNPGIDF  DVIRPGQTIN  LPTTAADATT  EQPDGGVIQ469

Enzyme Prediction      help

No EC number prediction in MGYG000000582_00614.

CDD Domains      download full data without filtering help

Created with Snap234670931171401641872112342572813043283513753984224453249TagH6229ABC_KpsT_Wzt2265PRK135463298tagH17290CcmA
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG1134 TagH 3.98e-113 3 249 1 249
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis].
cd03220 ABC_KpsT_Wzt 1.20e-97 6 229 1 224
ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
PRK13546 PRK13546 1.09e-86 2 265 1 261
teichoic acids export ABC transporter ATP-binding subunit TagH.
PRK13545 tagH 1.80e-80 3 298 2 290
teichoic acids export protein ATP-binding subunit; Provisional
COG1131 CcmA 1.27e-45 17 290 1 284
ABC-type multidrug transport system, ATPase component [Defense mechanisms].

CAZyme Hits      help

Created with Snap234670931171401641872112342572813043283513753984224451469QSQ97661.1|CBM501469QSR13670.1|CBM501469BAV03462.1|CBM504469QSR10179.1|CBM505465QNT21142.1|CBM50
Hit ID E-Value Query Start Query End Hit Start Hit End
QSQ97661.1 3.79e-286 1 469 1 471
QSR13670.1 5.98e-283 1 469 1 471
BAV03462.1 6.40e-280 1 469 1 470
QSR10179.1 1.22e-275 4 469 4 471
QNT21142.1 6.56e-218 5 465 7 463

PDB Hits      download full data without filtering help

Created with Snap23467093117140164187211234257281304328351375398422445392586JBH_A412757DD0_A392406AMX_A392406M96_A392427K2T_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
6JBH_A 2.10e-81 39 258 35 254
Cryo-EMstructure and transport mechanism of a wall teichoic acid ABC transporter [Alicyclobacillus herbarius],6JBH_B Cryo-EM structure and transport mechanism of a wall teichoic acid ABC transporter [Alicyclobacillus herbarius]
7DD0_A 1.81e-79 41 275 36 262
Crystalstructure of the N-terminal domain of TagH from Bacillus subtilis [Bacillus subtilis subsp. subtilis str. 168],7DD0_B Crystal structure of the N-terminal domain of TagH from Bacillus subtilis [Bacillus subtilis subsp. subtilis str. 168],7DD0_C Crystal structure of the N-terminal domain of TagH from Bacillus subtilis [Bacillus subtilis subsp. subtilis str. 168],7DD0_D Crystal structure of the N-terminal domain of TagH from Bacillus subtilis [Bacillus subtilis subsp. subtilis str. 168]
6AMX_A 2.13e-48 39 240 31 233
CrystalStructure of Nucelotide Binding Domain of O-antigen polysaccharide ABC-transporter [Aquifex aeolicus VF5],6AN5_A Crystal Structure of The Nucelotide Binding Domain of an O-antigen polysaccharide ABC-transporter [Aquifex aeolicus VF5],6AN5_B Crystal Structure of The Nucelotide Binding Domain of an O-antigen polysaccharide ABC-transporter [Aquifex aeolicus VF5],6OIH_A Crystal structure of O-antigen polysaccharide ABC-transporter [Aquifex aeolicus VF5],6OIH_B Crystal structure of O-antigen polysaccharide ABC-transporter [Aquifex aeolicus VF5]
6M96_A 6.18e-48 39 240 33 235
ATP-boundconformation of the WzmWzt O antigen ABC transporter [Aquifex aeolicus VF5]
7K2T_A 1.83e-46 39 242 33 237
ChainA, ABC transporter [Aquifex aeolicus VF5],7K2T_C Chain C, ABC transporter [Aquifex aeolicus VF5]

Swiss-Prot Hits      download full data without filtering help

Created with Snap234670931171401641872112342572813043283513753984224455465sp|Q9CH26|TAGH_LACLA2451sp|Q831L8|TAGH_ENTFA1339sp|Q03SI5|TAGH_LEVBA5339sp|Q88ZH4|TAGH_LACPL5260sp|Q65E84|TAGH_BACLD
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9CH26 1.31e-218 5 465 7 463
Teichoic acids export ATP-binding protein TagH OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=tagH PE=3 SV=1
Q831L8 3.04e-108 2 451 3 442
Teichoic acids export ATP-binding protein TagH OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=tagH PE=3 SV=1
Q03SI5 1.64e-84 1 339 1 341
Teichoic acids export ATP-binding protein TagH OS=Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=tagH PE=3 SV=1
Q88ZH4 1.88e-80 5 339 6 342
Teichoic acids export ATP-binding protein TagH OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=tagH PE=3 SV=1
Q65E84 6.57e-80 5 260 4 255
Teichoic acids export ATP-binding protein TagH OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=tagH PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000056 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
305 327