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CAZyme Information: MGYG000000589_01009

You are here: Home > Sequence: MGYG000000589_01009

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Faecalibacterium;
CAZyme ID MGYG000000589_01009
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
900 MGYG000000589_80|CGC1 97933.33 5.3495
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000589 2241135 MAG Madagascar Africa
Gene Location Start: 891;  End: 3593  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000589_01009.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 90 412 4.8e-32 0.7569230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.49e-32 61 422 79 416
Polygalacturonase [Carbohydrate transport and metabolism].
pfam13229 Beta_helix 2.50e-06 231 343 48 154
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam12708 Pectate_lyase_3 1.30e-05 67 324 4 210
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
pfam10518 TAT_signal 2.57e-05 5 27 1 23
TAT (twin-arginine translocation) pathway signal sequence.
pfam13229 Beta_helix 0.001 231 394 2 154
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AXB28928.1 0.0 1 900 19 918
CBL02329.1 0.0 1 900 1 900
BCJ93914.1 2.60e-295 45 899 4 882
QOY86475.1 3.00e-93 58 712 17 492
AHG93184.1 6.37e-92 62 712 32 507

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 3.98e-13 57 335 37 315
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
4MXN_A 6.52e-09 65 293 22 215
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as TAT

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000000 0.000000 0.999964 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000589_01009.