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CAZyme Information: MGYG000000604_00550

You are here: Home > Sequence: MGYG000000604_00550

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA1829 sp900549415
Lineage Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; UBA1829; UBA1829; UBA1829 sp900549415
CAZyme ID MGYG000000604_00550
CAZy Family GH106
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1011 MGYG000000604_3|CGC3 114719.99 5.1781
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000604 3604218 MAG Madagascar Africa
Gene Location Start: 85680;  End: 88715  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000604_00550.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH106 8 675 3.2e-64 0.7900485436893204

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17132 Glyco_hydro_106 4.79e-06 388 642 640 872
alpha-L-rhamnosidase.
pfam17132 Glyco_hydro_106 2.62e-04 9 79 2 80
alpha-L-rhamnosidase.
pfam14683 CBM-like 0.001 938 970 120 148
Polysaccharide lyase family 4, domain III. CBM-like is domain III of rhamnogalacturonan lyase (RG-lyase). The full-length protein specifically recognizes and cleaves alpha-1,4 glycosidic bonds between l-rhamnose and d-galacturonic acids in the backbone of rhamnogalacturonan-I, a major component of the plant cell wall polysaccharide, pectin. This domain possesses a jelly roll beta-sandwich fold structurally homologous to carbohydrate binding modules (CBMs), and it carries two sulfate ions and a hexa-coordinated calcium ion.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM45834.1 3.09e-252 1 1009 2 1015
AVM45769.1 2.02e-212 13 1009 14 980
QHQ61014.1 9.99e-208 3 1009 1 1014
AIQ45953.1 4.21e-207 1 1009 2 1021
AIQ40096.1 7.66e-207 5 1009 6 1019

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000604_00550.