logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000605_00530

You are here: Home > Sequence: MGYG000000605_00530

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C;
CAZyme ID MGYG000000605_00530
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
939 MGYG000000605_18|CGC1 103614.88 5.0904
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000605 2224694 MAG Madagascar Africa
Gene Location Start: 21430;  End: 24249  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 264 448 2.6e-56 0.9076923076923077
CBM13 555 698 3.1e-24 0.6914893617021277
CBM13 711 887 1.9e-18 0.8829787234042553

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.19e-45 187 516 33 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 5.65e-21 260 452 10 190
Amb_all domain.
pfam00544 Pec_lyase_C 1.34e-20 262 445 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam14200 RicinB_lectin_2 2.04e-19 642 739 2 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 4.20e-18 595 684 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 1 908 1 885
CDM68184.1 1.20e-117 39 614 30 584
AJO19478.1 3.64e-91 37 531 30 490
QEO08224.1 3.64e-91 37 531 30 490
VEB20252.1 9.85e-91 37 531 30 490

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.08e-10 200 427 14 214
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
4G9M_A 2.91e-07 712 784 10 82
Crystalstructure of the Rhizoctonia solani agglutinin [Rhizoctonia solani],4G9M_B Crystal structure of the Rhizoctonia solani agglutinin [Rhizoctonia solani],4G9N_A Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine [Rhizoctonia solani],4G9N_B Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine [Rhizoctonia solani]
5B2H_A 5.83e-07 693 846 139 278
Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 2.58e-59 184 520 32 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 4.49e-58 184 520 32 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 3.65e-47 200 518 12 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 2.55e-44 184 518 7 306
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 3.82e-14 193 425 39 234
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.948252 0.048478 0.002017 0.000286 0.000149 0.000835

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000605_00530.