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CAZyme Information: MGYG000000606_02114

You are here: Home > Sequence: MGYG000000606_02114

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RC9 sp000433355
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp000433355
CAZyme ID MGYG000000606_02114
CAZy Family GH9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
960 MGYG000000606_11|CGC1 106736.55 5.4128
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000606 3291011 MAG Madagascar Africa
Gene Location Start: 68615;  End: 71497  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000606_02114.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH9 117 587 3.5e-73 0.9880382775119617
CE4 754 871 7.3e-19 0.8384615384615385

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00759 Glyco_hydro_9 2.50e-57 120 589 2 374
Glycosyl hydrolase family 9.
cd10917 CE4_NodB_like_6s_7s 9.50e-25 757 943 13 171
Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.
pfam02927 CelD_N 7.14e-22 21 106 1 83
Cellulase N-terminal ig-like domain.
cd02850 E_set_Cellulase_N 9.51e-21 22 112 1 86
N-terminal Early set domain associated with the catalytic domain of cellulase. E or "early" set domains are associated with the catalytic domain of cellulases at the N-terminal end. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually categorized into either exoglucanases, which sequentially release terminal sugar units from the cellulose chain, or endoglucanases, which also attack the chain internally. The N-terminal domain of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.
COG0726 CDA1 2.93e-19 730 954 50 255
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT35459.1 0.0 11 954 13 832
QTO25660.1 0.0 12 954 14 832
QUT98069.1 0.0 11 954 13 832
AUI47497.1 0.0 12 954 14 832
QCQ56204.1 0.0 12 954 14 832

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3X17_A 1.56e-40 20 592 15 556
Crystalstructure of metagenome-derived glycoside hydrolase family 9 endoglucanase [uncultured bacterium],3X17_B Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase [uncultured bacterium]
6DHT_A 2.93e-23 23 585 18 557
Bacteroidesovatus GH9 Bacova_02649 [Bacteroides ovatus ATCC 8483]
5U2O_A 3.04e-23 31 595 2 542
Crystalstructure of Zn-binding triple mutant of GH family 9 endoglucanase J30 [Thermobacillus composti KWC4]
5U0H_A 1.50e-20 31 595 2 542
Crystalstructure of GH family 9 endoglucanase J30 [Thermobacillus composti KWC4]
1UT9_A 7.80e-18 23 591 7 603
ChainA, CELLULOSE 1,4-BETA-CELLOBIOSIDASE [Acetivibrio thermocellus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P14090 3.79e-23 20 596 338 911
Endoglucanase C OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cenC PE=1 SV=2
A7LXT3 1.76e-22 23 585 32 571
Xyloglucan-specific endo-beta-1,4-glucanase BoGH9A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153) OX=411476 GN=BACOVA_02649 PE=1 SV=1
P23658 2.80e-18 23 590 4 543
Cellodextrinase OS=Butyrivibrio fibrisolvens OX=831 GN=ced1 PE=1 SV=1
A3DCH1 3.20e-18 23 612 214 828
Cellulose 1,4-beta-cellobiosidase OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celK PE=3 SV=1
Q05156 1.06e-17 20 596 182 746
Cellulase 1 OS=Streptomyces reticuli OX=1926 GN=cel1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000288 0.998925 0.000244 0.000173 0.000176 0.000168

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000606_02114.