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CAZyme Information: MGYG000000608_01936
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; UMGS1518; | |||||||||||
| CAZyme ID | MGYG000000608_01936 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 19; End: 1575 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 181 | 351 | 7.6e-19 | 0.37354988399071926 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd21510 | agarase_cat | 1.61e-08 | 192 | 341 | 42 | 185 | alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp. |
| COG3693 | XynA | 6.05e-08 | 169 | 367 | 69 | 257 | Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism]. |
| pfam01229 | Glyco_hydro_39 | 3.42e-06 | 217 | 341 | 109 | 224 | Glycosyl hydrolases family 39. |
| smart00633 | Glyco_10 | 1.07e-05 | 169 | 303 | 3 | 124 | Glycosyl hydrolase family 10. |
| pfam02449 | Glyco_hydro_42 | 2.55e-04 | 143 | 258 | 8 | 137 | Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVM44255.1 | 1.36e-170 | 17 | 514 | 19 | 513 |
| AVM44882.1 | 2.33e-12 | 27 | 481 | 237 | 677 |
| QII09404.1 | 5.90e-11 | 107 | 354 | 9 | 247 |
| CAJ71165.1 | 5.93e-11 | 107 | 354 | 9 | 247 |
| AHF94342.1 | 1.34e-10 | 91 | 474 | 291 | 651 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6Y2K_A | 4.63e-07 | 131 | 258 | 2 | 142 | ChainA, beta-galactosidase [Marinomonas sp. ef1] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000353 | 0.998885 | 0.000236 | 0.000175 | 0.000161 | 0.000146 |