dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000609_00365

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Basic Information help

Species

Lineage

Bacteria; Firmicutes_A; Clostridia; TANB77; UBA1234; UBA1234;

CAZyme ID

MGYG000000609_00365

CAZy Family

GT84

CAZyme Description

Cyclic beta-(1,2)-glucan synthase NdvB

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
800		92760.45	6.6074

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000609	1535020	MAG	Madagascar	Africa

Gene Location

Start: 10512; End: 12914 Strand: -

Full Sequence Download help

Enzyme Prediction help

EC	2.4.1.-

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT84	104	316	3.6e-96	0.9953488372093023

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd11753	GH94N_ChvB_NdvB_2_like	3.49e-53	308	633	1	336	Second GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This second of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
pfam06165	Glyco_transf_36	6.93e-39	366	603	5	244	Glycosyltransferase family 36. The glycosyltransferase family 36 includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Many members of this family contain two copies of this domain.
pfam10091	Glycoamylase	1.19e-33	104	316	1	215	Putative glucoamylase. The structure of UniProt:Q5LIB7 has an alpha/alpha toroid fold and is similar structurally to a number of glucoamylases. Most of these structural homologs are glucoamylases, involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity.
COG3459	COG3459	3.31e-14	546	796	1	236	Cellobiose phosphorylase [Carbohydrate transport and metabolism].
cd11751	GH94N_like_4	7.56e-12	406	612	12	222	Glycoside hydrolase family 94 N-terminal-like domain of uncharacterized function. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-), amongst other members. Their N-terminal domain is involved in oligomerization and may play a role in catalysis, but it is separate from the catalytic domain [an (alpha/alpha)(6) barrel]. The GH64N domain, as represented by this model, is found near the N-terminus of GH94 members and related proteins with uncharacterized specificities.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QCX34529.1	2.43e-197	1	796	1065	1874
ADG81306.1	1.16e-185	1	796	1065	1972
AUG57227.1	2.39e-182	1	796	1089	2076
ATW26012.1	4.43e-182	1	796	1057	1877
SNX54535.1	1.04e-181	1	779	1085	2014

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P20471	1.39e-105	2	796	1065	1999	Cyclic beta-(1,2)-glucan synthase NdvB OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ndvB PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000059	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000000609_00365.