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CAZyme Information: MGYG000000634_00302

You are here: Home > Sequence: MGYG000000634_00302

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Rhodocyclaceae; SFHR01;
CAZyme ID MGYG000000634_00302
CAZy Family GT83
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
555 63146.35 10.3279
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000634 1737692 MAG Madagascar Africa
Gene Location Start: 43784;  End: 45451  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000634_00302.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT83 14 427 8e-49 0.7962962962962963

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG1807 ArnT 1.56e-24 48 428 42 428
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis].
pfam02366 PMT 5.93e-10 50 232 41 233
Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families.
pfam13231 PMT_2 4.23e-09 70 229 2 157
Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.
COG1928 PMT1 2.41e-07 70 205 90 230
Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].
COG5305 COG5305 1.36e-04 70 281 97 311
Uncharacterized membrane protein [Function unknown].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRM18764.1 7.64e-113 17 554 13 533
QDV85726.1 2.24e-12 49 252 73 276
CAZ88266.1 5.09e-12 49 252 46 251
APV35997.1 8.52e-12 51 349 43 334
ADE11605.1 3.47e-11 48 357 42 347

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000053 0.000003 0.000001 0.000000 0.000000 0.000001

TMHMM  Annotations      download full data without filtering help

start end
12 34
90 112
119 136
141 159
166 181
185 204
211 233
259 281
305 323
328 345
357 376
380 398
405 427