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CAZyme Information: MGYG000000657_02429

You are here: Home > Sequence: MGYG000000657_02429

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E bubulae
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E bubulae
CAZyme ID MGYG000000657_02429
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
376 41177.39 9.0352
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000657 4450077 MAG Germany Europe
Gene Location Start: 6553;  End: 7683  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000657_02429.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 6 355 1.3e-137 0.9887005649717514

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 0.0 4 376 2 379
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 1.16e-168 4 372 2 379
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 1.64e-138 6 368 1 374
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 3.65e-138 6 371 8 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK01021 lpxB 6.14e-57 8 361 231 594
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIE34699.1 4.49e-258 1 376 1 376
SDU73601.1 4.49e-258 1 376 1 376
QPL32748.1 5.23e-257 1 376 1 376
ASC86335.1 5.23e-257 1 376 1 376
QPC36842.1 6.10e-256 1 376 1 376

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8S_A 5.28e-125 4 371 7 380
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]
5W8N_A 7.49e-125 4 371 7 380
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q3KH99 1.32e-228 1 376 1 376
Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=lpxB PE=3 SV=1
C3K6G9 1.63e-225 1 376 1 376
Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=lpxB PE=3 SV=1
Q4KHG3 5.53e-225 1 374 1 374
Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=lpxB PE=3 SV=1
Q1I639 1.50e-220 1 372 1 372
Lipid-A-disaccharide synthase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=lpxB PE=3 SV=1
Q886N0 7.31e-220 4 372 5 374
Lipid-A-disaccharide synthase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000657_02429.