CAZyme Information: MGYG000000682_01344

Basic Information

• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; UBA4334
• CAZyme ID: MGYG000000682_01344
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1546		166585.8	5.3042

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000682	2426258	MAG	Kazakhstan	Asia

• Gene Location: Start: 14312; End: 18952 Strand: +

Full Sequence      

MLLLAASSSFAQRQTDKLDRGLVAMKVSGGVYLSWRILGEEYYDVKYNVYRDGVQINDTP
LSVSNFKDAAGSATSTYTVKAVVRGQEQAASKSATPWESSYKEIKLKHEGIKSTLIPNDA
CCADVDGDGEIEILMKFDNASEANAGYPREGYNGEYSIFECLKQDGTRLWWVNCGPNMGD
FQNNEQNIVAYDWDGDGCAEAVMRATDGTVIHMADGTTYTVGNPSVNVRNANYGGINWFV
VTNSEYLVYLDGKTGKPYQCIKYPLPLLEEGETDYNKAWGVSKYDNGHRGSKHFFGAPYL
DGKKPSIFLARGIYTRHKMIALDVDPATHTLVERWRWNNNSNGPWKGQGYHNFCIADVDL
DGRDEIVYGSMVIDDNGKGLSTTGLGHGDSQHCSDFNPYIHGLEIYACNEDDPGNNYRDA
TTSKIYHRFKSSSDDGRAICGNFTNSFPGSLGCSAKEGSISTVTNNAVPGMDATGVCTNF
RIYWDGDLCSETFNYVNGKNTEGAVIKYGSWTPIYTCAGSLTNNDTKGTPCYQGDILGDW
REEIIMRTADNNIRIYSTPTQTKYRNYTLWHDHQYRNSMVWQMCGYNQTPHTSYFLGQLE
NITIAPPPLTTSGRTEVANGGTISKSLDSKHVLVFDNDNTNISIEDGAKPYIVTFNVPTW
VQGSAPSEATASSYKISHTTYTCNVTGGGLDGEARLIKQGDGVLNLPKTNFKHTGETNIW
AGTLNFDGTMTNSPLWLNRFAELNSNGGTFRSIKADYASVIRPGGEDSMGNITTDSLYLG
FGSRIAIDLYSDGLNADKINTKYLKVEKKTGTAWTTAGPKYLAPVIELTGHKTDGENTMA
SGKYVLGDVDKIEGDVNDIIIEGLATTKKALYVEDGKLVLEIYGLRNAAQVTWTGNMGNV
WNFAGDENFTIMNNDVAEATTFVYSDDVLFNDEAAQKTVNIDEEVIPNSFTVNNTAGYVF
NGNGYIGGAASFTKEGTGMVTINNSNSYTGGNHLKGGVTKVSQLSNQYSETGNLGGITKT
ADKFTMENGAVLQTSAAVEMGSLMKMVGEDGGVINASADFVMDALISGTTLTKKGSGCLK
TQKANTGLGRLVINGGSVAAQAGDPAKVVEIQNGTLWDDAQATTHEINVPSGKSGTWQLT
GVYYTAYKNKLTGGGTLTIVPRNTVQRVRLQGNWSAFTGTIKHVTKNICLPLDATTGLAN
GTLDIADGCSVSNVCKTFKIGKLTGKGSLLHPIANFQNSSAVNGSNTWQVGNSKEIGGDF
TFDGVMHDEGGSNKCNFDKIGSCKMTVSGEWTNSGTVKVSGGELFIKSGSTLGCGSLTVN
AGAKLSGTTKAGKPMTNSSFTINGEIQPGSYATAVTGSINFNGKNVTFGAASRIVVGLRK
SAASASAPGNSYLTNIGTLKLTAGATVAPFISEANMDNLTKDENTPDIFYVWTDAKTVNI
TGTLNFDLPQLPSYNYWDTSDIAKGILYVKCDAEKYQEFITGINGIDADEVVDVTATNMN
GVSVMTYTCPMGSVMSTAKHSTLVDGIYMLNVKTADGKTKTIKMLK

Enzyme Prediction     

No EC number prediction in MGYG000000682_01344.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL11	13	599	2.2e-155	0.9794168096054888

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	9.33e-159	16	594	2	564	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370	RGI_lyase	6.33e-40	13	97	1	86	Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK15319	PRK15319	1.47e-05	938	1403	549	1055	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	4.68e-04	966	1346	747	1117	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	0.001	637	1159	570	1095	fibronectin-binding autotransporter adhesin ShdA.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIM09959.1	0.0	1	1546	1	1542
AGB29439.1	4.24e-286	11	1463	21	1443
BCS86257.1	1.28e-281	15	882	2	866
ABN51485.1	2.41e-127	13	597	257	805
ADU75030.1	6.35e-127	13	597	257	805

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	1.66e-119	11	597	1	569	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	1.02e-113	13	598	9	577	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	1.21e-110	12	597	5	590	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	2.14e-118	11	597	38	606	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	5.27e-110	12	597	5	590	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.432789	0.566376	0.000215	0.000246	0.000186	0.000175

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000682_01344.