dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000722_00004

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Species

RC9 sp900545245

Lineage

Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp900545245

CAZyme ID

MGYG000000722_00004

CAZy Family

GH39

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
463		52798.64	5.3689

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000722	2915024	MAG	Kazakhstan	Asia

Gene Location

Start: 3947; End: 5338 Strand: -

No EC number prediction in MGYG000000722_00004.

Family	Start	End	Evalue	family coverage
GH39	89	416	2.5e-43	0.7749419953596288

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam01229	Glyco_hydro_39	1.44e-21	23	359	3	344	Glycosyl hydrolases family 39.
cd21510	agarase_cat	1.25e-07	140	256	73	187	alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.
COG3664	XynB	1.12e-05	101	418	37	339	Beta-xylosidase [Carbohydrate transport and metabolism].
COG3534	AbfA	7.37e-05	167	297	163	298	Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QJD82796.1	6.68e-80	32	458	12	435
QTH43246.1	7.13e-79	32	404	12	382
QJD85864.1	9.35e-74	33	460	14	445
QEL16017.1	2.88e-71	1	336	1	345
AVM69820.1	9.15e-71	23	368	3	357

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5Z3K_A	1.08e-28	25	342	11	311	Crystalstructure of glucosidase from Croceicoccus marinus at 1.8 Angstrom resolution [Croceicoccus marinus],5Z3K_B Crystal structure of glucosidase from Croceicoccus marinus at 1.8 Angstrom resolution [Croceicoccus marinus]
6YYH_A	6.69e-17	101	309	100	289	Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12]
6UQJ_A	1.61e-09	58	267	55	246	Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P23552	3.00e-11	100	256	79	231	Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000286	0.999052	0.000168	0.000165	0.000157	0.000138

There is no transmembrane helices in MGYG000000722_00004.