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CAZyme Information: MGYG000000734_00730

You are here: Home > Sequence: MGYG000000734_00730

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA10281 sp900548285
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; UBA10281; UBA10281 sp900548285
CAZyme ID MGYG000000734_00730
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
3288 MGYG000000734_7|CGC1 358553.72 4.5039
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000734 2140620 MAG Kazakhstan Asia
Gene Location Start: 61189;  End: 71055  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000734_00730.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 2525 2775 7.6e-21 0.5876923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.00e-21 2467 2773 76 369
Polygalacturonase [Carbohydrate transport and metabolism].
pfam09479 Flg_new 1.37e-08 3164 3229 1 65
Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.
pfam00295 Glyco_hydro_28 7.81e-05 2581 2777 48 214
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam02368 Big_2 7.44e-04 1791 1859 8 76
Bacterial Ig-like domain (group 2). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.
pfam18998 Flg_new_2 0.002 3185 3230 22 70
Divergent InlB B-repeat domain. This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGA23464.1 5.87e-159 2210 2951 71 794
QCD41820.1 3.03e-104 2255 2913 246 884
QGQ94767.1 2.63e-38 2470 2970 34 533
ADB48561.1 2.16e-36 2470 3002 25 531
ADB48560.1 1.79e-34 2470 2967 25 516

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MXN_A 7.20e-11 2480 2648 27 171
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002239 0.650793 0.345998 0.000394 0.000289 0.000257

TMHMM  Annotations      download full data without filtering help

start end
5 24
1965 1984
2004 2023
3261 3280