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CAZyme Information: MGYG000000839_01272
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Clostridium sp900540255 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900540255 | |||||||||||
| CAZyme ID | MGYG000000839_01272 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 67904; End: 69970 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 472 | 641 | 3.9e-17 | 0.37587006960556846 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2207 | AraC | 1.30e-21 | 171 | 274 | 19 | 122 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| smart00342 | HTH_ARAC | 2.19e-21 | 189 | 271 | 2 | 84 | helix_turn_helix, arabinose operon control protein. |
| pfam12833 | HTH_18 | 9.41e-19 | 194 | 273 | 1 | 81 | Helix-turn-helix domain. |
| COG4753 | YesN | 2.49e-12 | 116 | 274 | 309 | 474 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
| COG3664 | XynB | 6.07e-09 | 523 | 658 | 268 | 397 | Beta-xylosidase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ATD56640.1 | 0.0 | 1 | 688 | 1 | 689 |
| QBJ75981.1 | 0.0 | 1 | 688 | 1 | 689 |
| SLK21057.1 | 0.0 | 1 | 688 | 1 | 689 |
| ATD55683.1 | 0.0 | 1 | 688 | 1 | 689 |
| AYE35030.1 | 0.0 | 1 | 688 | 1 | 689 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3LSG_A | 4.18e-10 | 186 | 271 | 17 | 102 | Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum] |
| 4M29_A | 2.66e-07 | 523 | 666 | 334 | 477 | Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15] |
| 4EKJ_A | 4.62e-07 | 523 | 666 | 334 | 477 | ChainA, Beta-xylosidase [Caulobacter vibrioides] |
| 6YYH_A | 8.30e-07 | 501 | 657 | 333 | 474 | Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q5HJR8 | 1.92e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2 |
| Q6GD21 | 2.53e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
| Q8NYT6 | 2.53e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1 |
| Q6GKK1 | 3.33e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1 |
| Q7A882 | 1.33e-14 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000048 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |