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CAZyme Information: MGYG000000853_02268

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Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900549175
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900549175
CAZyme ID MGYG000000853_02268
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
458 MGYG000000853_153|CGC1 51740.56 9.9832
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000853 3157276 MAG China Asia
Gene Location Start: 5499;  End: 6875  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000853_02268.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 2.52e-08 31 76 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 1.77e-07 31 76 1 44
Lysin motif.
pfam01476 LysM 5.05e-07 32 77 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd06339 PBP1_YraM_LppC_lipoprotein-like 7.09e-05 111 219 1 103
periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
COG1388 LysM 6.83e-04 17 77 54 111
LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QVJ80666.1 1.98e-181 31 458 32 450
QUB46898.1 9.70e-175 6 458 7 451
ALO48876.1 4.13e-163 1 458 1 448
EFC70285.1 1.77e-153 1 458 1 454
QYR10688.1 4.02e-146 6 458 3 450

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

0.000276 0.999105 0.000165 0.000150 0.000141 0.000134

TMHMM  Annotations      download full data without filtering help

start end
7 26