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CAZyme Information: MGYG000000873_00495

You are here: Home > Sequence: MGYG000000873_00495

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Porphyromonas sp900539765
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas sp900539765
CAZyme ID MGYG000000873_00495
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
507 56956.66 7.4021
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000873 2049752 MAG United States North America
Gene Location Start: 36451;  End: 37974  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000873_00495.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 8.66e-12 93 136 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
COG1388 LysM 1.66e-11 41 148 1 122
LysM repeat [Cell wall/membrane/envelope biogenesis].
smart00257 LysM 2.03e-10 93 136 1 44
Lysin motif.
pfam13458 Peripla_BP_6 8.45e-10 156 444 1 292
Periplasmic binding protein. This family includes a diverse range of periplasmic binding proteins.
cd00118 LysM 1.43e-09 30 71 3 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEE13417.1 0.0 1 507 1 507
ATS00530.1 1.22e-78 30 500 37 496
ATS06910.1 1.22e-78 30 500 37 496
ATR99267.1 1.71e-78 30 500 37 496
ATS02331.1 1.71e-78 30 500 37 496

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P54421 3.31e-06 32 125 90 182
Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis (strain 168) OX=224308 GN=lytE PE=1 SV=1
Q5HRU2 9.93e-06 24 120 23 112
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1
Q8CMN2 9.93e-06 24 120 23 112
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sle1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000627 0.998577 0.000274 0.000174 0.000160 0.000155

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000873_00495.