CAZyme Information: MGYG000000902_01379

Basic Information

• Species: Clostridium neonatale
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium neonatale
• CAZyme ID: MGYG000000902_01379
• CAZy Family: GH13
• CAZyme Description: Pullulanase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
654	MGYG000000902_13|CGC1	75184.98	4.5877

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000902	4770522	MAG	China	Asia

• Gene Location: Start: 74880; End: 76844 Strand: +

Full Sequence      

MTPLELKRYYSSEEFKNKYIYNEKDLGITYLKDKTVFKLWAPTAAEVVIRLYNAGSDEEA
DSKQLNSFNMKKSDNGIWEKEIEDDLDGVYYDYRIKIDNEVFVSADPYAIACGVNGNRSM
VIDLNKTDPTGWNEDSHTRAQVDCPIIYELHIKDFSYDKASGISDKYRGKYLAFTENGTT
LNNDNVHKTGIDYLKELGITHVHILPAFDYASVDESKDDNQFNWGYDPLNYNVPEGSYST
NPFKGDVRIREFKEMVLALHNAGISVVMDVVYNHTYSLDSWFQKTVPYYYYRQNEDGTLC
NGSACGNDTASERKMFGNYMKNSILYWADEYHIDGFRFDLMGLHNVELMNEIRQELDKLP
NGKNILMYGEPWAADESPMEENAIPALKKNIDKLDERIAIFCDSTRDAIKGHVFYGEVPG
FVNGGEGFEEDIKSSVRAWCNSVEEWNPKSPKQIISYVSAHDNFTLYDKLMECLKTEKDY
RKTDKELIRINKLVAAIVFTCQGTVFFQAGEEFARTKLGEDNSYNLSPELNKLDWTRAYE
YSDLVEYYKGLIKIRNNFSAFYNGKLDNVDRIKFLPVTHKGGVIYTLQSDDGTDDLWNEV
YVAYNSTVENIEVTLPNDKWQVLADSESSSKFEKDEYVSGTIKIQPQSALILGR

Enzyme Prediction     

No EC number prediction in MGYG000000902_01379.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH13	191	512	1e-107	0.9965397923875432

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd11341	AmyAc_Pullulanase_LD-like	0.0	146	555	4	406	Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins. Pullulanase is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. Pullulanases are very similar to limit dextrinases, although they differ in their action on glycogen and the rate of hydrolysis of limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
TIGR02104	pulA_typeI	0.0	14	627	1	599	pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
COG1523	PulA	1.52e-134	36	654	70	691	Pullulanase/glycogen debranching enzyme [Carbohydrate transport and metabolism].
TIGR02103	pullul_strch	4.34e-111	26	536	128	729	alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). [Energy metabolism, Biosynthesis and degradation of polysaccharides]
PLN02877	PLN02877	5.90e-106	26	536	215	798	alpha-amylase/limit dextrinase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
APF22772.1	0.0	1	654	1	654
QJU43799.1	0.0	1	654	1	654
QSX01694.1	0.0	1	654	1	654
QGH22811.1	0.0	1	654	1	654
QCJ05146.1	0.0	1	654	1	654

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7LSA_A	1.65e-189	11	651	49	710	ChainA, Pullulanase [Ruminococcus bromii]
7LSR_A	2.63e-188	11	651	49	710	ChainA, Pullulanase [Ruminococcus bromii]
7LSU_A	2.80e-188	11	651	49	710	ChainA, Pullulanase [Ruminococcus bromii]
7LST_A	2.89e-188	11	651	49	710	ChainA, Pullulanase [Ruminococcus bromii]
2WAN_A	1.80e-143	18	652	310	919	Pullulanasefrom Bacillus acidopullulyticus [Bacillus acidopullulyticus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O33840	3.32e-144	21	654	220	842	Pullulanase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pulA PE=1 SV=2
C0SPA0	7.19e-117	2	635	83	690	Pullulanase OS=Bacillus subtilis (strain 168) OX=224308 GN=amyX PE=1 SV=1
A0A0H2UNG0	4.15e-71	10	583	427	1057	Pullulanase A OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=spuA PE=1 SV=1
A0A0H2ZL64	5.22e-71	10	583	412	1042	Pullulanase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) OX=373153 GN=spuA PE=3 SV=1
Q9F930	7.81e-71	10	583	434	1064	Pullulanase A OS=Streptococcus pneumoniae OX=1313 GN=spuA PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000050	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000902_01379.