Species | Clostridium nigeriense | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium nigeriense | |||||||||||
CAZyme ID | MGYG000000915_01115 | |||||||||||
CAZy Family | GH136 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 81636; End: 85274 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH136 | 36 | 567 | 6.3e-166 | 0.9959266802443992 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd00063 | FN3 | 2.21e-12 | 918 | 1002 | 1 | 93 | Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
smart00060 | FN3 | 7.81e-11 | 918 | 990 | 1 | 81 | Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
pfam00041 | fn3 | 5.55e-09 | 921 | 994 | 3 | 84 | Fibronectin type III domain. |
COG0419 | SbcC | 6.89e-07 | 1012 | 1145 | 562 | 679 | DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]. |
PRK03918 | PRK03918 | 2.39e-06 | 1012 | 1140 | 588 | 700 | DNA double-strand break repair ATPase Rad50. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QCT93619.1 | 4.79e-185 | 2 | 568 | 5 | 580 |
ARV05068.1 | 3.96e-183 | 31 | 568 | 29 | 579 |
ESV34046.1 | 1.38e-167 | 36 | 946 | 46 | 973 |
QGV03377.1 | 5.51e-167 | 36 | 946 | 46 | 973 |
QSY56996.1 | 1.42e-166 | 9 | 950 | 18 | 971 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
7V6M_A | 8.35e-193 | 31 | 574 | 3 | 581 | ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis] |
5GQC_A | 2.49e-142 | 36 | 568 | 17 | 597 | Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum] |
7V6I_A | 3.04e-140 | 31 | 571 | 8 | 612 | ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967] |
6KQT_A | 6.11e-140 | 36 | 454 | 244 | 663 | CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099] |
6KQS_A | 1.98e-135 | 36 | 454 | 244 | 663 | CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P20533 | 9.29e-14 | 914 | 995 | 556 | 636 | Chitinase A1 OS=Niallia circulans OX=1397 GN=chiA1 PE=1 SV=1 |
P50401 | 2.55e-11 | 912 | 1007 | 476 | 580 | Exoglucanase A OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cbhA PE=1 SV=1 |
P27050 | 2.91e-11 | 929 | 1007 | 104 | 184 | Chitinase D OS=Niallia circulans OX=1397 GN=chiD PE=1 SV=4 |
P50899 | 1.10e-10 | 914 | 1007 | 700 | 792 | Exoglucanase B OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cbhB PE=1 SV=1 |
A0P8X0 | 7.69e-08 | 912 | 993 | 809 | 889 | Alpha-amylase OS=Niallia circulans OX=1397 GN=igtZ PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000489 | 0.998377 | 0.000508 | 0.000212 | 0.000204 | 0.000177 |
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