CAZyme Information: MGYG000000915_03064

Basic Information

• Species: Clostridium nigeriense
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium nigeriense
• CAZyme ID: MGYG000000915_03064
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
527		59604.99	4.529

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000915	3503945	MAG	China	Asia

• Gene Location: Start: 17191; End: 18774 Strand: -

Full Sequence      

MSQIDVIRESIRYEQLLREGLTNQPLKGEHLLRDSQYPDMKEVLGVDAKATITNKEIVGD
KVMVEGNLDYIVFYVSKEEAIMDAPTNKIHAVVFNDKFSNYVDLNNDEHNTVCNVECEIE
HIEANWMNERKVGIDGLLTLRWEIYKNGEFEYVKDIEGKEDIQTKKEDETLNGVKGEKDI
DLMGKSMLKATMDKPEIDEILKCNMNLHKKEVKVVEGKVYVGCYCKVSILYKGKDNKELE
TLEDDVYLSKEEEVPGITSDMLSTLDLVVAEEQHAVNSDDVGENRVVNIEFVVKGSIKVY
SNEKVEILKDAYSPTMNIEIENGKKEFTLIHSIVNSEVTTREIFDIENKEDRVEKIVAST
GQPLIKDKVVEDERVKVEGTINVCIIYKVAGEELNYGILTGNIPFNSIIDVRGLKKDMNV
VVKPYLENMDTNIEGNAISVKATVGLGIKSYYKVNKDFIKDVVEGAEGTKEKKASVIIYV
VGDGETLWDLAKKYNTTVAELERLNDINEDQQIKAGCKLIIPGRALF

Enzyme Prediction     

No EC number prediction in MGYG000000915_03064.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam12673	DUF3794	2.11e-11	353	433	2	79	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
cd00118	LysM	6.94e-11	477	521	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam12673	DUF3794	1.28e-09	39	125	1	78	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
pfam12673	DUF3794	8.10e-09	196	269	1	72	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
pfam01476	LysM	9.49e-09	479	522	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ASW44085.1	2.52e-245	1	527	1	527
ATD56377.1	5.69e-232	1	527	1	526
ATD55952.1	5.69e-232	1	527	1	526
QBJ76253.1	5.69e-232	1	527	1	526
SLK22265.1	5.69e-232	1	527	1	526

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000066	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000915_03064.