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CAZyme Information: MGYG000000949_00885

You are here: Home > Sequence: MGYG000000949_00885

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900551195
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900551195
CAZyme ID MGYG000000949_00885
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
407 MGYG000000949_85|CGC1 44136.39 4.4934
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000949 1666180 MAG China Asia
Gene Location Start: 4541;  End: 5764  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000949_00885.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 30 379 2.6e-32 0.963076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.92e-20 33 236 113 349
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 4.96e-10 31 224 3 176
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 8.28e-09 114 224 133 248
polygalacturonase
PLN02155 PLN02155 0.003 140 219 144 229
polygalacturonase
PLN03003 PLN03003 0.008 149 212 146 214
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUC03291.1 3.50e-165 17 405 16 402
AEB07770.1 3.36e-156 11 404 13 406
QED59087.1 1.53e-79 23 394 29 394
AUJ85227.1 1.87e-79 13 383 18 382
AUX11711.1 2.15e-70 5 383 8 378

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000020 0.000036 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000949_00885.