logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000956_01873

You are here: Home > Sequence: MGYG000000956_01873

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Barnesiella sp900538705
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900538705
CAZyme ID MGYG000000956_01873
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
570 MGYG000000956_7|CGC2 61799.13 4.9673
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000956 2507716 MAG Denmark Europe
Gene Location Start: 67452;  End: 69164  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000956_01873.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 75 262 1.5e-81 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.46e-05 66 217 73 236
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 0.002 69 254 3 175
Amb_all domain.
TIGR04183 Por_Secre_tail 0.003 515 568 13 70
Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT77068.1 3.30e-193 4 568 8 577
QUT90477.1 2.16e-192 2 556 3 568
ALJ58404.1 6.14e-192 2 556 3 568
AXP82553.1 3.90e-183 19 535 119 612
QNL41084.1 2.87e-181 23 474 58 521

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8NQQ7 1.84e-51 10 471 4 414
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q2UB83 3.54e-50 10 471 4 414
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
B0XMA2 6.98e-50 23 471 23 415
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1
Q4WL88 1.34e-49 23 471 23 415
Probable pectate lyase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyC PE=3 SV=1
A1DPF0 2.56e-48 23 471 23 415
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000462 0.895863 0.102915 0.000289 0.000245 0.000212

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000956_01873.