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CAZyme Information: MGYG000000996_00734

You are here: Home > Sequence: MGYG000000996_00734

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900547345
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900547345
CAZyme ID MGYG000000996_00734
CAZy Family CE7
CAZyme Description tRNA modification GTPase MnmE
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
594 64125.92 4.6724
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000996 1986576 MAG Denmark Europe
Gene Location Start: 927;  End: 2711  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000996_00734.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE7 299 582 1.5e-77 0.8913738019169329

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK05291 trmE 2.87e-138 5 307 2 298
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.
COG0486 MnmE 5.12e-120 7 307 4 300
tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE [Translation, ribosomal structure and biogenesis].
TIGR00450 mnmE_trmE_thdF 2.16e-77 14 307 1 286
tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. [Protein synthesis, tRNA and rRNA base modification]
pfam05448 AXE1 2.47e-73 299 588 29 316
Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.
pfam12631 MnmE_helical 3.94e-70 131 307 1 177
MnmE helical domain. The tRNA modification GTPase MnmE consists of three domains. An N-terminal domain, a helical domain and a GTPase domain which is nested within the helical domain. This family represents the helical domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AZH69971.1 1.83e-216 298 594 29 325
QIA32853.1 3.68e-216 298 594 29 325
ATP53212.1 4.26e-215 298 594 29 325
ANU40725.1 5.86e-148 299 588 30 319
QQR06497.1 5.86e-148 299 588 30 319

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3FCY_A 1.51e-65 325 588 81 343
CrystalStructure of Acetyl Xylan Esterase 1 from Thermoanaerobacterium sp. JW/SL YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3FCY_B Crystal Structure of Acetyl Xylan Esterase 1 from Thermoanaerobacterium sp. JW/SL YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3FCY_C Crystal Structure of Acetyl Xylan Esterase 1 from Thermoanaerobacterium sp. JW/SL YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
3GEE_A 1.30e-61 10 307 18 316
Crystalstructure of MnmE from Chlorobium tepidum in complex with GDP and FOLINIC ACID [Chlorobaculum tepidum],3GEI_A Crystal structure of MnmE from Chlorobium tepidum in complex with GCP [Chlorobaculum tepidum],3GEI_B Crystal structure of MnmE from Chlorobium tepidum in complex with GCP [Chlorobaculum tepidum],3GEI_C Crystal structure of MnmE from Chlorobium tepidum in complex with GCP [Chlorobaculum tepidum]
1XZP_A 5.79e-56 8 307 34 327
Structureof the GTP-binding protein TrmE from Thermotoga maritima [Thermotoga maritima],1XZQ_A Structure of the GTP-binding protein TrmE from Thermotoga maritima complexed with 5-formyl-THF [Thermotoga maritima]
3GEH_A 1.92e-54 9 307 9 307
ChainA, tRNA modification GTPase mnmE [Nostoc sp. PCC 7120 = FACHB-418]
7CUZ_A 2.40e-54 327 582 53 308
ChainA, Acetylxylan esterase [Lactococcus lactis subsp. lactis KF147],7CUZ_B Chain B, Acetylxylan esterase [Lactococcus lactis subsp. lactis KF147],7CUZ_C Chain C, Acetylxylan esterase [Lactococcus lactis subsp. lactis KF147],7CUZ_D Chain D, Acetylxylan esterase [Lactococcus lactis subsp. lactis KF147]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1VER5 2.60e-113 5 307 2 303
tRNA modification GTPase MnmE OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=391774 GN=mnmE PE=3 SV=1
Q72D51 2.60e-113 5 307 2 303
tRNA modification GTPase MnmE OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=mnmE PE=3 SV=1
Q30YQ7 1.27e-110 1 307 1 309
tRNA modification GTPase MnmE OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=mnmE PE=3 SV=1
Q1MPF1 9.32e-94 8 307 3 302
tRNA modification GTPase MnmE OS=Lawsonia intracellularis (strain PHE/MN1-00) OX=363253 GN=mnmE PE=3 SV=1
Q8R6K8 5.93e-73 8 307 4 305
tRNA modification GTPase MnmE OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=mnmE PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000060 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000996_00734.