CAZyme Information: MGYG000001014_00049

Basic Information

• Species: Varibaculum timonense
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
• CAZyme ID: MGYG000001014_00049
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1214		128901.78	5.6314

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001014	1848217	MAG	Bangladesh	Asia

• Gene Location: Start: 890; End: 4534 Strand: +

Full Sequence      

MNLKKLAKATGITMLATSLVALSQLPAVAAPVQAEIIPATTYYVSAAGNDANDGKSEDKP
LKTLDAVNKLTLHAGDKILLKRGDVFNNQHLCISGDKAFKFNDGTTCAYQADSDGAPLVI
SAYGEGDKPVIAANGQGQWKLDYGLTLGHSQHYLAKDAVSSTVMLKDAENIELSDLEITN
KRIEDGSGKENGCAYNDNCALDRTGIAGIAQNQGTLDHVVLRNLYVHDVKGNIYNKHSVN
GAIYFSSLIASDQMKPAADRTAPGFKPALDKPEKGYPRFNDLQIINNRVENSGRWGIAAV
YSAYASVAVDGRIQIPDEVITKYGSTNVVISNNFIKNIGGDAITAMYGYKPVVESNVATE
IATQMNTTDYLFAKDTPGKFAKNGGRVAASIWPWKSKDAVFRFNEGFNTQNADKGNGDGM
PWDADSGDGTVYEYNYSANNSGGTVMFCGDQAANSTFRFNIAQNDSLGALSPTFWDGGYS
GKYPNAHVYNNTFYLKAGSSILHPAQAQQGTMKVENNIFYNMSDQPRTEAWNPLGHITWD
PKDIDGNAKVAYSHNLYYNYANYPASDLNPVKVSKGSAVLADPGKAPSDAATDMKARPHY
FPGLSYAEADAKTTVFDGYKLAANSPAIGKGKEIVDDNGFALGTDFFGRTANTFDIGAVS
TNQKPLPPATVTDSAKLVSTTYQVTDGDTVPSKNGAYKAGNTIHVPSTEKSPSTIAEVLS
NLTVEGKAQIVDAAGNAQAEDALVAAGMKLKITSLDGKVTSEFPLSIDNVYSWLDDYTHN
VQGNVWFGQKQTGANGKWVNIDKADPAWPNWQVDEYYGPGINGAQLAPTDRSALHGLLSD
SPTSAGATAMAWRAPKTGYITFKVKDAAAGKPAEPFLRQGDATGGTVTVKLLVNGIEKRS
LTLAKKDIRPDGEFNFTANDANALQVSKGDFVRVVAESTGTPAQPSMFVSPTITYIDRTV
DTEVIPVKPGTDTGEPDTPTPGQNPQTDKGYVEGKVPGFALSLAGDKVTGKVTLPQVEGI
EYLVNGAALADSYPAGPVVVTLKAKAGYKLGESATTEWKFTVPATPEFASDTGKLQIPTT
VGVSYDAQNQTMAPGKSVTVTATASDGYSFAATRAVKWTFTADQKDDSKPGTDPEKPGTD
PEKPGTVPSDNPTRPDNGTVADGKQKNPNKPATSVKDKQGSLVTTGSLAGIAAIAALTLG
AAGMAIVRRRLKEQ

Enzyme Prediction     

No EC number prediction in MGYG000001014_00049.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	40	659	4.2e-135	0.9918533604887984

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	3.69e-04	280	363	9	92	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADP35567.1	1.03e-168	40	1036	68	974
ADO52688.1	7.95e-167	40	957	34	890
QTQ17888.1	1.98e-165	40	957	34	892
EFR49825.1	7.91e-164	40	957	21	877
VEG19581.1	9.24e-164	40	957	34	892

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	1.20e-165	35	658	4	574	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A	4.41e-130	40	659	18	595	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
7V6I_A	1.40e-127	40	659	14	607	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A	7.27e-94	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	5.68e-90	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000279	0.999026	0.000162	0.000189	0.000159	0.000147

TMHMM  Annotations     

start	end
1185	1207