CAZyme Information: MGYG000001014_01097

Basic Information

• Species: Varibaculum timonense
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
• CAZyme ID: MGYG000001014_01097
• CAZy Family: CBM32
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1664		183519.58	5.7999

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001014	1848217	MAG	Bangladesh	Asia

• Gene Location: Start: 178; End: 5172 Strand: +

Full Sequence      

MKKTYFRALSVLMALPLALTFSVLPIVSPLPDAQAAPSLSQPTKNPVTFPGTLPGMATAS
VNGKVATIANNAISVDFDFTSGVAIKKVENKLTNSQVPFSSKSAFSFTYQGKEISLESFS
AASQPQVVSLTPKQNTGSFADAYPGKAIVQVFQGGQNIPDELKKLKLVYRAELLEDSNYV
RQVLEIENPGNQPVDITNVTMVDAQVTGRVEGKDDGSPILLGQDKKETAWVGGESPLAKV
SVSSGKALVKLPRVHDLLPGKPWEIATTIGVVPQDQMRRAFSYYIERERCRSRRTFLHFQ
SWFDLKPTGSARLMINHQEMLAAEKMFFDEMNKRDAAVDSYWVDDGWDYLRDPKQNDERK
LNVWDFDPTEFSNGFSEDLKVMESQGAKLSVWMSPFGGYGTSAQRRAQLGNSKLQDQNKR
PWEKSNKVMRLSDPIYFKYFRDKVFYMMDNGVQGFKFDGIAQGDLYITGAKNELIGDYEK
LFELMQDMRGKNKDVWINATVGTWGSPYWFWYADSIYRDGNDAGQTGQGNSQEKYVNYRD
QQVYQNMIVENPLVPINSVMNHGVIFSDRTDGQVPNQPHDFSNKSVRTAFSNDLKNFFSM
GIGLQELYLRNTLFNAKNIGADNAKFAWDEIAKNAKWARQNVDLLTDTHWIGGSPGKGEV
YGTAAWHNPGISADDARAMISVRNPSNQPKYIAINAASDLQIPGGQATRFKFTERDDKTN
SWVIDNKPYYIQLKPFEVLLFEGRPTNEEPTQSEKPKVDPCYQQISQSDWEITVDSEQAT
GNEKDLGRYAIDNNPNTIWHTAWDPAIAQYPHSATVDMGRLNQVCRLTYLPRQSGGNNGD
IKTYDLAVSKDGNNWQTVVTDGTFANDKEEKAIEIPKDKQEFRYFKLTAKSAQNGQEFAG
AAELRAWGTAGKSEWLDQENWKCSASDYEATGENNGNSGWPKHACDNNRDTQWHSAYSGG
VKPMPHWLQIDLGKIADVSALKYTPRQDAYPANGIVKEYRVEYSLDSSKWNPAAQGTLTD
GKPATINFDASHRAKYIRFTAISAQNSQAFAGAAELDVKGSYVTATPEAPTFTDKDGTDN
DTYTIPKIEGVRYLINGNEVAPGVHKVTNGITTVQITATAAPGWELAPGDWSWEGKFTNT
STEPSQPKPATVTNSVYTSADTTLQSWQNEKVTSMAAKPYIGALRPGTNYGVFGEKFVSS
DVRDGTDAKMGLLSFDLTKYEEAPQKAVLKLTYVGFRGSPRATDTTSISVMAVDTQKCTN
QASTCPPSSATWATRPSFSSDNAKVATSGAFEFGNTTYTGDAIKIVPANTKEVTVDVTEI
VASQIKAGHKSITFALQENKGNEIRFASYEGANGALQGANQEMAPQLLMTVEQPPFTIEV
TKNPKIRYQVGQSFDANGIEVTKTETATGTKTVLTADKYVLDSFAFDGKNVGSYPIKVTL
KENPKVAATFHVYVGKDSVDTPGDNRGSDVLWYAQPASQTADGNIPDGTVKGDDDKWQRH
TLPIGNGKVGGTVWGEIAKERITFNEETLWTGGPGTSASYKGGNNDSKGRNGATLRELNK
KLEQGAQTVNPSNLTGGENAAEQGSYQNWGNIYIDYGLGTQPVENYERSLNLSEGKASVS
FRSGQVDYKREFLVSNPDNVMVVRLTASQAKALNLKVTFPTNSH

Enzyme Prediction     

No EC number prediction in MGYG000001014_01097.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
CBM32	925	1056	1.7e-23	0.9516129032258065
CBM32	780	904	3.7e-21	0.8951612903225806

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam14498	Glyco_hyd_65N_2	4.30e-51	1471	1662	1	163	Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.
pfam00754	F5_F8_type_C	1.76e-21	929	1056	1	127	F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam00754	F5_F8_type_C	7.29e-17	771	904	1	127	F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057	FA58C	1.70e-14	938	1047	22	134	Substituted updates: Jan 31, 2002
cd00057	FA58C	1.06e-10	768	866	10	100	Substituted updates: Jan 31, 2002

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH70491.1	1.07e-226	8	1144	5	1119
SCG40654.1	2.29e-210	47	909	58	894
AXI80327.1	1.03e-175	17	746	8	721
QSY56848.1	2.20e-147	1160	1663	52	556
QTB91571.1	1.63e-146	1160	1663	52	556

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2EAE_A	4.08e-74	1463	1664	11	213	ChainA, Alpha-fucosidase [Bifidobacterium bifidum]
2EAD_A	4.14e-74	1463	1664	12	214	ChainA, Alpha-fucosidase [Bifidobacterium bifidum],2EAD_B Chain B, Alpha-fucosidase [Bifidobacterium bifidum]
2EAB_A	4.14e-74	1463	1664	12	214	Crystalstructure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAB_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAC_A Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum],2EAC_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum]
4A41_A	5.51e-17	765	907	25	160	CpGH89CBM32-5,from Clostridium perfringens, in complex with galactose [Clostridium perfringens],4A44_A CpGH89CBM32-5, from Clostridium perfringens, in complex with the Tn Antigen [Clostridium perfringens],4A45_A CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose [Clostridium perfringens],4AAX_A CpGH89CBM32-5, from Clostridium perfringens, in complex with N- acetylgalactosamine [Clostridium perfringens]
2RDY_A	2.79e-16	1502	1656	18	162	ChainA, BH0842 protein [Halalkalibacterium halodurans C-125],2RDY_B Chain B, BH0842 protein [Halalkalibacterium halodurans C-125]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q8L7W8	2.66e-17	1489	1664	55	221	Alpha-L-fucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=FUC95A PE=1 SV=1
I1S2N3	1.52e-14	760	907	45	187	Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1
P0CS93	2.00e-14	760	907	45	187	Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1
A2R797	2.37e-12	1502	1650	39	181	Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=afcA PE=3 SV=1
Q2USL3	1.79e-08	1504	1648	35	173	Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=afcA PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000294	0.999009	0.000167	0.000199	0.000162	0.000145

TMHMM  Annotations     

start	end
5	27