CAZyme Information: MGYG000001039_01593

Basic Information

• Species: Phocaeicola sp900553185
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900553185
• CAZyme ID: MGYG000001039_01593
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
989		109859.8	8.2818

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001039	3066315	MAG	Denmark	Europe

• Gene Location: Start: 27129; End: 30098 Strand: +

Full Sequence      

MGKKSFGWILIGLLLAGQVAAQPVGILNQVSDTVACRKWVDEQLRSMTLKQKIGQLFIHT
VAPVLSQRNKENIAAAIKEYGIGGLLFSGGDLKKQVELTNLAQRQSKIPLMITFDGEWGL
AMRLKGTPSFPKNRVLGCISQDSLLYAYGREVARQLHEIGVQVNFAPVADVDNNPDNPVI
NVRSFGSDPANVARKVIAYMRGLQDGGIVAVCKHFPGHGDTDVDSHKALPRLGFTRERLD
SIELYPFRKAVEAGISGVMVGHLDVPELGTEPASVSVDIVQNMLKHQLGFRGLVFTDALE
MKGISGREAVCAQALIAGNDLLLAPRNLKKSMASVLEAVRKGKLTEEEITERCRKVLTYK
YAMGLNKTPKITLEGLDSRLSTPETARLTEALQRASVTVAKDDSDWLPLDLSLSGNVLLS
VSNSLSESYPLYKELREKMSISWMRVGQDSLNVVEERLRPAQRLIVALHTSKVAPYDEWL
ERLAADKPLILICFEPQQVLEKLPKILAKAAAVIVAHEETDRLQQYVARVLLGKEAVSGR
LSIAVSENLLAGAGVSIDPDIPRSYQPEDFGMNSAVLAQIDSIAWEGIRNGAYPGCHILI
QKGGYPVYNKCFGTYTYDGEIPVKENDLYDLASLSKTTGTLLAVMKLYDEGKFGLTDKVS
KFVPELRKTNKENLTVQDLLFHESGLPAYLPFYMKAIDLKSCKGGLFRKKQDANHRVQVD
ANLYACTSFSYKPEWVSDTYSEEYSLQVADSLYLKPEFRKVILNEIVKAPLKGRSYRYSC
LNFMLLKEMVEAISGAPMDAYLDSVFYRPMGLTHIAYCPLRYFDKSQIVPTVKEDFLRKG
PLQGYVHDEAAAFQGGVSGNAGLFATARDVAQVYQMLLDKGVFGDRRYLSRATCELFLTM
KSKESRRGLGFDKPDMEHEESSPCAVEAPASVVGHTGFTGTCAWADPDNDLVFVFLSNRI
YPRPFDRKALMRLNIRPRIQQLMYQSLMK

Enzyme Prediction     

No EC number prediction in MGYG000001039_01593.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	103	323	1.9e-57	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	1.09e-77	48	358	1	315	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	1.08e-75	47	412	1	353	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	1.23e-53	567	959	30	395	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	1.47e-38	580	973	1	322	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	4.52e-36	549	986	8	390	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRO23705.1	0.0	4	989	3	988
ADY37542.1	0.0	11	987	9	985
QUT56867.1	0.0	9	989	7	992
QEW35592.1	0.0	9	989	7	992
QQY43102.1	0.0	9	989	7	992

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	3.60e-66	45	541	9	527	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	3.96e-59	47	419	42	457	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.15e-58	47	419	16	431	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	2.04e-58	47	419	46	461	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	1.14e-54	79	396	55	380	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.17e-58	47	419	42	457	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	5.83e-46	73	471	55	488	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	2.92e-42	567	959	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	3.95e-42	567	959	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	1.86e-38	39	409	18	398	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000222	0.999201	0.000145	0.000143	0.000135	0.000132

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001039_01593.