CAZyme Information: MGYG000001063_01018

Basic Information

• Species: Robinsoniella sp900540475
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900540475
• CAZyme ID: MGYG000001063_01018
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1837	MGYG000001063_29|CGC2	202158.31	4.9105

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001063	7637037	MAG	Sweden	Europe

• Gene Location: Start: 63059; End: 68572 Strand: -

Full Sequence      

MGKKRMRKKLSAWLLVICMVMQLFTGLGVEAEASEGAFSVYELECESAVNPLGIDESTPK
LSWKLNSSQRGVMQTSYRIMAATSKDNLDAGNYDVWDSTVVESDQSAEVVYGGKALEPGT
RYYWKVQVTDNKGNTAVSTEEAYWETGLMGTPWDAKWIELDMGAAPSPEKYSVEMDFRII
NDDAGIIFAGKDNSNFLMWQINTFEKKFKGVTSFRPHQWVKGAAACIDEFTIEDVIPAEA
QKEQHHIKIEVDGNQITTFIDDTQIDQRTSDYAAYGKLGFRQTYNPGDCDEQAAYDNIVV
KDGAGNIMFSDNFDSGINNNFSIGNIDSGELVVTNALGLQNDAKAAAPMYRKDFEVEKQV
KKATVYASALGIYELEMNGQKVGDDFFNPGWTNYELNQDDRNYVMYQAFDVTDMMQDGTN
VIGAITGHGWYSGKLFVGGKERYGKDSKLLCQLEIEYADGEKVKISSNADWVASGDGPIV
SDDFQMGETYDATREMPGWSEADFNFQGSWNPVKESGYDGDIVAHMGPGVKVIKEIKPIS
VNEQAEGTYIFDLGQNVSGFARMNVNGDADTVVKLRFGEMLQNDGSLYTANLRSAAATDY
YTLKGDPNGETWQPRFTFHGFRYIEVTGYPGVPTVDDITGVAISSLQNTTGSFTTSNEDV
NQLQSNITWGQLDNFISVPTDCPQRDERLGYTGDSQVFVRTAAMNQDVQTFFEKFMMDVT
TNQRADGAIADWTPNYVTPGDGLSGSFGASGWGDGVIIIPWTMYTTYGDTSIIRQSYEGM
KGWIRYYQNLETKDHLVEGCGNNYGDWLSVGADTPIDLICTGYYAYSCDLFSKMAEAIGE
TEDAAIYRNLFEEIKEGFNKAFVDEEGHVGNGTQTSYLMALKFNLLKDDEARKKAAAYLV
EDIKNKNWHLSTGFMGVAYLCPMLTEMGYADVAYRLLLQDTYPSWLYSVRAGATTIWERW
NSYDYETGQFGDVGMNSFNHYSLGSVGEWFYNYVAGISYDEKNPGYKHFNLKPYPGGGLS
YIDSSFESVYGNIESSWSYGDNDSFFMNVTIPANSTATVYVPAENKDQVLENGILAAESE
GLTFVKMEDGKAVFEAGSGQYQFTTVLRKQVVLNILDDNASQSSMVSINGGEPQKLPIIE
NVYVGDEVTLSAVPVNDVDYQFTKWYGEGFEDDSSEITLQIHEETKLAIQNSRIERENLA
LSKKADASTSISNGDWGIQNLNDGQLISVKGSLGFTSNGTNSADADHWVEIDLGEDMDFN
RIHLYPRTDAFTADGKTPSFPKDFSVEICKEGESKYTTIAEYTDYQAPAGKPAVLKWEEG
VSARKVRIHVTRVGNPPAGEIHYFQLAEMGIYNQAALQSQKLKETIQQATAFEGKESEYT
SSSWKAFSKALKHAEKVLLNENITQSELDAAAQTLQDAIKGLMQRADKTALKNAIEEAEE
YLAQEAKYTAKSFGILKQKLEEAVQVMEQKDAIQKEADEALKGIQSAIKGLVPAGDHQAP
STPGNVKASGITENAVTISWNASTDNTGVEKYLVKNKDTVVSTVTNGTKAEIKGLAPNTA
YTFTVYACDKAGNVSGGANVTFKTLNKIQVTAVSSVKLNYSSLTIKGKGTKQLKAEVLPG
NAANKKVSWRSSNNSVISVDANGKVTAKKAGKATVTVRSADGGKEASCKITVTTVKAKKI
SLNKKSKTIYKGKTYQLKSSLKPSNATDKVTWTSSKKSVATVTQNGLVKAKKDGQTTITA
KISGKKKITCRITVKEVKAKKVKMNLHKKTLKADKTLQLKATVTPKNSTDTLKWESSNKK
AAKVSQKGVVTALKKGRTTITVTTPQGKKDSCLITVE

Enzyme Prediction     

EC	3.2.1.40	3.1.1.73

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	542	1060	3.4e-178	0.9940476190476191
CBM67	343	517	8.2e-32	0.8920454545454546

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	2.09e-136	650	994	3	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	6.67e-55	358	534	1	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	2.96e-42	546	644	5	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
COG5492	YjdB	4.68e-24	1588	1750	176	329	Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
pfam17390	Bac_rhamnosid_C	2.42e-20	996	1067	1	69	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SDT43572.1	0.0	39	1356	2	1304
SCG46613.1	2.06e-264	1	1106	2	1076
SDT43619.1	3.77e-255	33	1104	45	1086
AVT31775.1	6.82e-249	31	1169	34	1137
QIN81509.1	8.20e-249	43	1103	11	901

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W5M_A	2.22e-220	37	1107	3	1032	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6I60_A	1.31e-153	34	1103	26	939	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
6GSZ_A	1.01e-133	342	1069	126	854	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
1K85_A	5.17e-17	1497	1584	1	88	ChainA, CHITINASE A1 [Niallia circulans]
6BT9_A	2.68e-09	1496	1638	479	637	ChitinaseChiA74 from Bacillus thuringiensis [Bacillus thuringiensis],6BT9_B Chitinase ChiA74 from Bacillus thuringiensis [Bacillus thuringiensis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q82PP4	1.61e-219	37	1104	3	1029	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2	9.63e-157	337	1103	164	920	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	4.90e-128	346	1107	168	912	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4	8.71e-98	50	1102	42	946	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
P20533	2.21e-16	1490	1579	455	543	Chitinase A1 OS=Niallia circulans OX=1397 GN=chiA1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000272	0.999063	0.000169	0.000174	0.000144	0.000145

TMHMM  Annotations     

start	end
12	29