dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001063_01361

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Basic Information help

Species

Robinsoniella sp900540475

Lineage

Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900540475

CAZyme ID

MGYG000001063_01361

CAZy Family

GH127

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1697	MGYG000001063_32\|CGC7	188564.68	4.64

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001063	7637037	MAG	Sweden	Europe

Gene Location

Start: 313899; End: 318992 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001063_01361.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH127	341	546	5.1e-25	0.3893129770992366
CBM66	1139	1281	1.5e-22	0.8709677419354839

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07944	Glyco_hydro_127	1.90e-40	110	546	62	502	Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.
COG3533	COG3533	7.18e-15	306	662	270	576	Uncharacterized conserved protein, DUF1680 family [Function unknown].
cd00063	FN3	1.14e-06	1609	1695	8	92	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
smart00060	FN3	3.13e-04	1609	1676	8	77	Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
pfam00041	fn3	0.002	1609	1689	7	85	Fibronectin type III domain.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QNF30112.1	4.60e-140	43	724	29	740
ALL07583.1	5.41e-137	39	685	25	667
QPH39723.1	6.30e-135	45	672	29	652
AOM80627.1	4.01e-134	42	672	22	648
ATP55412.1	1.27e-133	42	672	28	654

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5MQO_A	6.19e-12	301	549	367	609	Glycosidehydrolase BT_1003 [Bacteroides thetaiotaomicron]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000353	0.998802	0.000216	0.000232	0.000194	0.000166

TMHMM Annotations help

There is no transmembrane helices in MGYG000001063_01361.