Species | Robinsoniella sp900540475 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900540475 | |||||||||||
CAZyme ID | MGYG000001063_01878 | |||||||||||
CAZy Family | GH110 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 37049; End: 43399 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH110 | 43 | 587 | 3.2e-189 | 0.9562043795620438 |
CBM51 | 1526 | 1662 | 4.3e-40 | 0.9776119402985075 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam08305 | NPCBM | 2.87e-43 | 1523 | 1663 | 2 | 136 | NPCBM/NEW2 domain. This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.) |
smart00776 | NPCBM | 1.34e-36 | 1528 | 1663 | 9 | 145 | This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. |
pfam09479 | Flg_new | 1.02e-10 | 1867 | 1929 | 1 | 65 | Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria. |
pfam17851 | GH43_C2 | 3.74e-07 | 880 | 1030 | 57 | 199 | Beta xylosidase C-terminal Concanavalin A-like domain. This domain is found to the C-terminus of the pfam04616 domain. This domain adopts a concanavalin A-like fold. |
cd00063 | FN3 | 2.04e-05 | 1937 | 2018 | 1 | 88 | Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
BBA55548.1 | 5.12e-223 | 43 | 727 | 23 | 721 |
BAM76380.1 | 1.70e-221 | 43 | 727 | 28 | 726 |
AFL04872.1 | 2.06e-221 | 43 | 727 | 23 | 721 |
QRI58269.1 | 2.36e-221 | 43 | 727 | 28 | 726 |
ADO53462.1 | 2.49e-221 | 43 | 727 | 42 | 740 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
7JW4_A | 4.69e-48 | 43 | 581 | 27 | 566 | Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta] |
7JWF_A | 2.05e-47 | 43 | 581 | 27 | 566 | Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta] |
2VMH_A | 1.62e-24 | 1510 | 1663 | 6 | 151 | Thestructure of CBM51 from Clostridium perfringens GH95 [Clostridium perfringens] |
2VMG_A | 1.93e-24 | 1510 | 1663 | 12 | 157 | Thestructure of CBM51 from Clostridium perfringens GH95 in complex with methyl-galactose [Clostridium perfringens] |
2VMI_A | 5.59e-24 | 1510 | 1663 | 6 | 151 | Thestructure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95 [Clostridium perfringens] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
B1V8K7 | 4.28e-175 | 37 | 727 | 28 | 723 | Alpha-1,3-galactosidase A OS=Streptacidiphilus griseoplanus OX=66896 GN=glaA PE=1 SV=1 |
Q826C5 | 6.85e-163 | 23 | 641 | 23 | 619 | Alpha-1,3-galactosidase A OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=glaA PE=3 SV=1 |
Q8A2Z5 | 2.15e-103 | 60 | 585 | 32 | 536 | Alpha-1,3-galactosidase A OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaA PE=3 SV=1 |
Q64MU6 | 1.18e-93 | 44 | 583 | 26 | 552 | Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1 |
Q5L7M8 | 2.95e-93 | 44 | 583 | 26 | 552 | Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000259 | 0.999022 | 0.000190 | 0.000199 | 0.000170 | 0.000145 |
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