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CAZyme Information: MGYG000001089_01455

You are here: Home > Sequence: MGYG000001089_01455

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium sp000435835
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp000435835
CAZyme ID MGYG000001089_01455
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
689 MGYG000001089_110|CGC1 81347.91 4.7523
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001089 3268107 MAG Sweden Europe
Gene Location Start: 67520;  End: 69589  Strand: +

Full Sequence      Download help

MRKQYINYPS  NLPVNISYYN  IHNYPTHWHN  STEIIYVLEG  SINISIDTDS  FTLKENEVEI60
INPDECHSFS  SENDNKVLIF  QIDPDFFEKY  YKDIRNVFFY  TNSNDEEDQN  GEKYDELKSL120
LCKILCEFVQ  TLEDFDEQIE  DILINLLYHL  INNFHYLTTD  KEELKEKSEQ  LDRYHRISKY180
IFNNYNNNIT  LQEIAKKEFL  SPHYLSHEIK  YATGHSFTDL  INLTRIEESI  KLLLDTTMSI240
TEISEKIGFS  HVRYYNKNFK  SYFGCTPLQY  RKKYYLNEND  FDKSKNVTSL  DLNGALNLLS300
YNLENYDRFN  FENKLWNIHI  NMDESLNIFD  NNFKDILNLG  EAFDLLIEDN  KDILEEVQEE360
IHFTYGRLEK  MFHNDMGVFI  DSDFYNWNRA  KAVLEFLYDI  DIKPLIVIDN  TAFTTEKYTN420
VLKSFIEYFS  ALDFSPIEDL  KFQFSSTISK  EIKNYLLDFL  NNEFSFEVLQ  DDFVIENTLN480
QIYDTSYMLP  YIIHNTILKK  DNLSFLRNFD  VLEKATNITN  EVFIGAPGIV  NDMGIRKPSY540
YAFYLLSKLA  NEIVSIDDGC  IVTKSDDLYA  ILLYCHNNDM  DSLAKYESIY  KNGILKKSFK600
KKYSLNIANL  KSATRIITYT  IDESTGSSYN  YWLSMGSPKR  LNKEEKEILH  KASYPKIEFK660
YSIKNSVLNI  ITELNGYGAK  LIILRNIKQ689

Enzyme Prediction      help

No EC number prediction in MGYG000001089_01455.

CAZyme Signature Domains help

Created with Snap3468103137172206241275310344378413447482516551585620654480641GH39
Family Start End Evalue family coverage
GH39 480 641 3.2e-19 0.35730858468677495

CDD Domains      download full data without filtering help

Created with Snap3468103137172206241275310344378413447482516551585620654189271HTH_ARAC169274AraC194273HTH_1883274YesN499658XynB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00342 HTH_ARAC 6.60e-23 189 271 2 84
helix_turn_helix, arabinose operon control protein.
COG2207 AraC 4.13e-22 169 274 17 122
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
pfam12833 HTH_18 7.07e-20 194 273 1 81
Helix-turn-helix domain.
COG4753 YesN 4.87e-15 83 274 252 474
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664 XynB 4.63e-13 499 658 245 397
Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap34681031371722062412753103443784134474825165515856206541688ATD56640.1|GH01688QBJ75981.1|GH01688SLK21057.1|GH01688ATD55683.1|GH01685ASW43808.1|GH0
Hit ID E-Value Query Start Query End Hit Start Hit End
ATD56640.1 0.0 1 688 1 689
QBJ75981.1 0.0 1 688 1 689
SLK21057.1 0.0 1 688 1 689
ATD55683.1 0.0 1 688 1 689
ASW43808.1 0.0 1 685 1 685

PDB Hits      download full data without filtering help

Created with Snap34681031371722062412753103443784134474825165515856206545016651PX8_A1802714FE4_A1802714FE7_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1PX8_A 4.24e-06 501 665 310 459
Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]
4FE4_A 6.13e-06 180 271 293 384
Crystalstructure of apo E. coli XylR [Escherichia coli K-12],4FE4_B Crystal structure of apo E. coli XylR [Escherichia coli K-12],4FE4_C Crystal structure of apo E. coli XylR [Escherichia coli K-12]
4FE7_A 6.41e-06 180 271 313 404
structureof xylose-binding transcription activator xylR [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Created with Snap346810313717220624127531034437841344748251655158562065430676sp|Q5HJR8|Y084_STAAC30676sp|Q7A882|Y097_STAAN30676sp|Q99XB1|Y101_STAAM30658sp|Q6GKK1|Y107_STAAR30676sp|Q6GD21|Y078_STAAS
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5HJR8 4.65e-19 30 676 21 733
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q7A882 1.41e-18 30 676 21 733
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1 1.41e-18 30 676 21 733
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q6GKK1 2.47e-18 30 658 21 713
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21 2.47e-18 30 676 21 733
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000048 0.000017 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001089_01455.