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CAZyme Information: MGYG000001134_01505

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Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900757495
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900757495
CAZyme ID MGYG000001134_01505
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1804 MGYG000001134_23|CGC1 193716.21 4.6999
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001134 2166498 MAG China Asia
Gene Location Start: 26438;  End: 31852  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001134_01505.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 114 235 5.7e-20 0.8951612903225806

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 5.05e-16 108 244 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam09479 Flg_new 3.54e-15 1664 1726 2 65
Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.
NF033189 internalin_A 2.22e-07 1643 1801 617 794
class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.
pfam13385 Laminin_G_3 3.92e-07 1220 1337 17 150
Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.
cd00057 FA58C 6.65e-06 114 230 17 134
Substituted updates: Jan 31, 2002

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCC62414.1 0.0 257 1735 26 1571
QQA11075.1 2.19e-187 236 1299 92 1166
AOY54034.1 5.83e-187 236 1299 92 1166
BAB80970.1 8.07e-187 236 1299 92 1166
ABG83191.1 1.55e-186 236 1299 92 1166

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2J7M_A 8.96e-09 114 246 17 147
Characterizationof a Family 32 CBM [Clostridium perfringens]
2J1A_A 9.16e-09 114 246 18 148
Structureof CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose [Clostridium perfringens ATCC 13124],2J1E_A High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc [Clostridium perfringens ATCC 13124]
2V5D_A 2.15e-07 114 246 605 735
Structureof a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens. [Clostridium perfringens]
2Y5P_A 3.34e-06 1664 1725 6 68
B-repeatof Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_B B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_C B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_D B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8XL08 7.68e-07 114 258 635 772
O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagJ PE=1 SV=1
Q0TR53 1.32e-06 114 246 635 765
O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=nagJ PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

0.000391 0.998688 0.000215 0.000252 0.000222 0.000194

TMHMM  Annotations      download full data without filtering help

start end
7 29
1777 1799