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CAZyme Information: MGYG000001157_01860

You are here: Home > Sequence: MGYG000001157_01860

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gemmiger sp900540775
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger sp900540775
CAZyme ID MGYG000001157_01860
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
517 MGYG000001157_96|CGC1 56492.89 5.3096
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001157 2792015 MAG Austria Europe
Gene Location Start: 12099;  End: 13652  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001157_01860.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 105 473 1.2e-76 0.9507692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.93e-95 12 450 12 468
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 6.22e-28 177 462 39 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 3.35e-24 73 470 60 414
polygalacturonase ADPG
PLN03003 PLN03003 4.25e-21 81 470 24 368
Probable polygalacturonase At3g15720
PLN02793 PLN02793 3.85e-19 169 397 126 342
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATP00558.1 4.85e-250 1 517 1 518
QIA43717.1 4.85e-250 1 517 1 518
AXB29658.1 2.79e-249 1 517 1 518
CBL00656.1 6.52e-248 1 517 1 518
AXA82452.1 8.76e-246 1 517 1 518

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.83e-40 87 436 34 389
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 2.99e-31 87 458 51 425
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 1.51e-25 84 394 13 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 7.04e-24 46 433 115 549
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4C2L_A 4.89e-12 91 399 26 309
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 2.77e-47 234 447 35 249
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 1.22e-41 87 465 69 431
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 2.01e-25 51 433 115 525
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P26509 1.16e-24 84 394 39 340
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P18192 1.58e-24 84 394 39 340
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999758 0.000290 0.000005 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001157_01860.