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CAZyme Information: MGYG000001162_00152
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA1822 sp900545365 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_C; Negativicutes; Veillonellales; Dialisteraceae; UBA1822; UBA1822 sp900545365 | |||||||||||
| CAZyme ID | MGYG000001162_00152 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 66223; End: 68739 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR00487 | IF-2 | 0.0 | 257 | 832 | 3 | 581 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| CHL00189 | infB | 0.0 | 214 | 837 | 114 | 742 | translation initiation factor 2; Provisional |
| PRK05306 | infB | 0.0 | 1 | 834 | 1 | 744 | translation initiation factor IF-2; Validated |
| COG0532 | InfB | 0.0 | 337 | 838 | 1 | 508 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| cd01887 | IF2_eIF5B | 4.39e-98 | 342 | 505 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 2.11e-201 | 257 | 832 | 274 | 854 |
| CAE6204650.1 | 2.28e-11 | 345 | 545 | 751 | 968 |
| AHC21644.2 | 9.85e-09 | 346 | 464 | 20 | 160 |
| AGL63702.2 | 2.26e-08 | 346 | 464 | 18 | 158 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 6.29e-195 | 248 | 832 | 298 | 884 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 4.03e-185 | 338 | 832 | 7 | 503 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 1.22e-184 | 338 | 832 | 1 | 497 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 5LMV_a | 1.07e-148 | 268 | 832 | 6 | 568 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
| 3J4J_A | 1.41e-148 | 268 | 832 | 6 | 568 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q3AB98 | 3.22e-239 | 257 | 838 | 243 | 827 | Translation initiation factor IF-2 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=infB PE=3 SV=1 |
| Q24UI6 | 2.96e-235 | 257 | 837 | 390 | 971 | Translation initiation factor IF-2 OS=Desulfitobacterium hafniense (strain Y51) OX=138119 GN=infB PE=3 SV=1 |
| B0K1D6 | 2.11e-234 | 260 | 832 | 114 | 689 | Translation initiation factor IF-2 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=infB PE=3 SV=1 |
| B0K9Q0 | 8.18e-234 | 260 | 832 | 113 | 688 | Translation initiation factor IF-2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=infB PE=3 SV=1 |
| C5D9C9 | 3.30e-233 | 257 | 832 | 150 | 728 | Translation initiation factor IF-2 OS=Geobacillus sp. (strain WCH70) OX=471223 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000074 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |