CAZyme Information: MGYG000001268_01089

Basic Information

• Species: Rothia mucilaginosa_B
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Micrococcaceae; Rothia; Rothia mucilaginosa_B
• CAZyme ID: MGYG000001268_01089
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
342	MGYG000001268_169|CGC1	34692.89	4.5372

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001268	1847122	MAG	Italy	Europe

• Gene Location: Start: 318; End: 1346 Strand: +

Full Sequence      

MDHLSTPGSAPAAFASRRATLASRPATFASAPAAAPRTVGAGIASAEVAAAAGSATESGT
KANYQDALLFIAPPLLSAAVLGALSVNLHRIPSAHPLADASLLCAGAAALLITAWWFISF
IYALFYARSLRVSSNNADRAVLKVPAFFRPRFMRRIVLTLGGTALGVGAVLAPAQAAVVT
PGNAGANGTEGLPQTTVSAVMVADSTGTAAADTSPATVSDADSAGTAADSTTADSPSTPP
ALSAEIPDIPLAPQPTEAAGSLQDRSPFFSPPRAEAGTYSYTVQAGDTLWSIAAEQLGEG
TDASTIYNYTLDIYEANRDALGQNAELLYAGQVLQIPEQPVH

Enzyme Prediction     

No EC number prediction in MGYG000001268_01089.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00118	LysM	2.05e-09	280	336	2	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
PRK11198	PRK11198	2.05e-09	281	338	98	147	LysM domain/BON superfamily protein; Provisional
COG1652	XkdP	2.06e-07	218	339	141	264	Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown].
pfam01476	LysM	2.22e-07	281	337	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257	LysM	2.25e-07	281	336	2	44	Lysin motif.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAS20589.1	1.36e-176	1	342	1	346
QXW98223.1	8.33e-167	1	342	1	320
ATF63722.1	3.41e-160	1	342	1	305
VEI23440.1	8.94e-19	60	337	6	258
VEJ29802.1	7.59e-16	66	339	11	341

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.999718	0.000331	0.000001	0.000000	0.000000	0.000000

TMHMM  Annotations     

start	end
67	89
104	126
156	178